RNA id: XM_043256127.1


Basic Information

Item Value
RNA id XM_043256127.1
length 962
RNA type mRNA
GC content 0.51
exon number 3
gene id ap5s1
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 5261036 ~ 5271247 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCTGATTCGCAGTCATGTGACCAAACACGGAAGAACCCATGCAAGGAGTCACGAGTTTGacacacatttattacaaaGTTTACGTTCTCGTGCGTGTTTTCATCGGTGGTTTGTGATATGCCGGATCGGCCATGGTGATTTGCTTCTTAATCCACACGGTGTGTCCGGTGAGCGCGCTCTCCGCAGGCGAGAGTCGGATACTGTACGCGCGCGCGTTCGGACCCGAGACCGGAGACGGTGACTTCACACCGGAGCAGAGGCGACTGATGCAGAAAGAGAAGCTCCACGTGGTGGCGAGGCAGGTGAGGAGTGCTGTGGCTCTGAGTCGGGAGGCCTCGGGCGGTTTGGGTGTGGAGGCGGTGCTGGGTGAGGAGGCCGCAGCTCTGGGTGAAGCTGACAGCGGAGTGTTTTCCCTGGGCGATGCAGAGCTCTTCCCAGACCGCGCTGTTGTTCTGTGGCTGGGGGTTCATTCTCTGGCGTTCACTCTGGTCTGCAGATCACACGAAAACCTGCTGCTCGCAGAGGGAGCGCTTCGCAACATCGCCCGTCACTGCCTGGAGGAGCTACGTCTGCTGGGAACCGGTGCTGAGATGGCTCACTGCAGCAGTGGATGAGGATGGTCTGTCTGGatgtgtcggtgtgtgtgtttgtccaaCCGATGTCACATTATTCCTGATGGATTTTGTTCCTGTTAGGTGACATGGAGCCATCTGGGGGATCCTGCAGTGAGCGTGTGTATATCTGAAAGGTGAAAGTGAGAAAAGGAGAAACAAATAGCTGTATCAACGCTGAGGTAAAGTGGCTCCGAAAAGTCACTAATTAAAAGGgacaataaaaaatctatatgcATTATGTAACAGAACAACGAAGCAAGTGACAATAAAAACGAAATTGCTTTtagttttgaaaaaagaaatgcgTTTCAAAAGagtatttgcattaaaaaaaaaaatcaaatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134670 lncRNA upstream 83015 5177718 ~ 5178021 (+) False rab11fip5a
TU134605 lncRNA upstream 224920 5035359 ~ 5036116 (+) True G90905
TU134562 lncRNA upstream 247374 5003410 ~ 5013662 (+) True G90879
TU134586 lncRNA upstream 296021 4964702 ~ 4965015 (+) True G90888
TU134323 lncRNA upstream 565194 4625603 ~ 4695842 (+) False si:ch211-250c4.5
TU134692 lncRNA downstream 126248 5397495 ~ 5435571 (+) False G90957
TU134690 lncRNA downstream 162335 5433582 ~ 5435571 (+) True G90957
TU134737 lncRNA downstream 230395 5501642 ~ 5505510 (+) True G90985
TU134758 lncRNA downstream 252498 5523745 ~ 5525112 (+) True G90997
TU134769 lncRNA downstream 269245 5540492 ~ 5597345 (+) True G91003
XM_043254582.1 mRNA upstream 1827 5252901 ~ 5259209 (+) True cdc25b
XM_043255102.1 mRNA upstream 48172 5198874 ~ 5212864 (+) True sfxn5a
XM_043255101.1 mRNA upstream 48523 5198875 ~ 5212513 (+) False sfxn5a
XM_043255100.1 mRNA upstream 48523 5198878 ~ 5212513 (+) False sfxn5a
XM_043255099.1 mRNA upstream 48523 5198882 ~ 5212513 (+) False sfxn5a
XM_043256276.1 mRNA downstream 73279 5344526 ~ 5431348 (+) False gfra4a
XM_043256275.1 mRNA downstream 73281 5344528 ~ 5431348 (+) True gfra4a
XM_043254888.1 mRNA downstream 296255 5567502 ~ 5574433 (+) True ky
XM_043255787.1 mRNA downstream 437274 5708521 ~ 5740890 (+) True fgfr3
XM_043256158.1 mRNA downstream 523993 5795240 ~ 5807876 (+) True nsd2
TU134595 other upstream 263140 4992327 ~ 4997896 (+) False si:ch73-49p17.1
TU134239 other upstream 1016995 4182499 ~ 4244041 (+) False G90660
TU134245 other upstream 1016995 4182499 ~ 4244041 (+) False G90660
TU134242 other upstream 1016995 4241132 ~ 4244041 (+) True G90660
unassigned_transcript_1924 other upstream 1189137 4071806 ~ 4071899 (+) True trnai-uau_4
unassigned_transcript_1926 other downstream 1860179 7131426 ~ 7131496 (+) True trnag-gcc_68
TU135767 other downstream 2564943 7836190 ~ 7838941 (+) False chchd1
XR_006252298.1 other downstream 2587451 7858698 ~ 7881483 (+) False zswim8
TU135961 other downstream 3035239 8306486 ~ 8310824 (+) True G91833
XR_006252358.1 other downstream 3395021 8666268 ~ 8683052 (+) False pcnx2

Expression Profile