RNA id: TU134800



Basic Information


Item Value
RNA id TU134800
length 714
lncRNA type inter_gene
GC content 0.51
exon number 4
gene id G91022
representative True

Chromosome Information


Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 4958383 ~ 4959411 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GATAAAAGAGACGCGTGATGCCCAGCGTCAAGCAAAGGAATATAAAGCAGAAGCTAAGCAACCCTGACACACAAGATCATTACCTAGCAGAAGCTCCACCCCCTTTTTCAGCAGCACCTGTTTGGCTTGTTCTTTGACAGACGGCAACAGATCAGGATCAGCCACCTCCTCACGCGGGTGGATCAGAGTCACCTAGATGAAATCAGCGTGAGACAAGAACGAGCATGATGTCTGTTTGTGTGCGAATGCAGCGCTTCACCTTCTTGTCGGTAAATTCAGTCCTGATCTCAGCAGCCAGTTCAACACCCGTGGTCCCGCCTCCGACAACTACGACCGCGCTCGCCTCCTGGATCTGAAACAATGGATGAACGTGGTGTCCACCGAATTGTGTTTTCCTGGGAAATGTCCGCTTGTTCCGGTGCACAGAATGAGGTTACCACAGTCTGCGTTTCTGTGTCTATCTGTATGACACGGCCTTGGAGGAAGTTCAGTCCAAATGTCTCTTTGTATGGCATCGTGTTATTAGCACACCAGCTTGAACTGAGGCACGCAGCGCTGCAACGTTGTGATGAAACGCATCCAGGATGTCAATGAGCATGAAGGGCACCCCATGATGTTTAAGGTGTTGAGCGGCTGCAATGCCTCCAAAACCACCGCCAACAATCACCACATGGACTTTCTCATCGATGGACAGCTGACCTCCCATGATGCTTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU134515 lncRNA downstream 125239 4829751 ~ 4833144 (-) True G90846
TU134506 lncRNA downstream 207415 4750432 ~ 4750968 (-) True G90842
TU134496 lncRNA downstream 259771 4690885 ~ 4698612 (-) True col13a1
TU134419 lncRNA downstream 335579 4549111 ~ 4622804 (-) True G90786
TU134803 lncRNA upstream 5191 4964602 ~ 4964959 (-) True G91025
XR_006252371.1 lncRNA upstream 169101 5128512 ~ 5129707 (-) True LOC122356716
TU134865 lncRNA upstream 170940 5130351 ~ 5130949 (-) True G91066
TU134900 lncRNA upstream 301654 5261065 ~ 5262123 (-) True G91085
TU135101 lncRNA upstream 771845 5731256 ~ 5732678 (-) True G91210
XM_043256063.1 mRNA downstream 2590 4931419 ~ 4955793 (-) False ninl
XM_043256062.1 mRNA downstream 2590 4931419 ~ 4955793 (-) True ninl
XM_043256066.1 mRNA downstream 2612 4931419 ~ 4955771 (-) False ninl
XM_043256065.1 mRNA downstream 13814 4931419 ~ 4944569 (-) False ninl
XM_043256111.1 mRNA downstream 54291 4837778 ~ 4904092 (-) True gbf1
XM_043255104.1 mRNA upstream 49161 5008572 ~ 5040509 (-) False sema4ga
XM_043255105.1 mRNA upstream 49161 5008572 ~ 5040361 (-) False sema4ga
XM_043255103.1 mRNA upstream 49161 5008572 ~ 5040360 (-) True sema4ga
XM_043255946.1 mRNA upstream 81153 5040564 ~ 5054042 (-) True slf2
XM_043255793.1 mRNA upstream 104887 5064298 ~ 5070193 (-) False wdr32
XR_006252267.1 other downstream 269215 4672966 ~ 4689168 (-) False LOC122356061
TU135397 other upstream 1265850 6225261 ~ 6225733 (-) False LOC122356805
TU135441 other upstream 1398790 6358201 ~ 6390715 (-) False sdccag8
unassigned_transcript_1925 other upstream 2171734 7131145 ~ 7131215 (-) True trnag-gcc_67
unassigned_transcript_1927 other upstream 2175661 7135072 ~ 7135142 (-) True trnag-gcc_69
TU135889 other upstream 3084154 8043565 ~ 8047901 (-) True G91775

Expression Profile