RNA id: TU134803


Basic Information

Item Value
RNA id TU134803
length 358
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G91025
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 4964602 ~ 4964959 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aaaaaaataaacatcagttgTCACTCTGTATTTCCCAATAATATGTtgtagaaaaattatatttaaatgcttagttTGTAGTCCAAGCTCTGGAGGACAAAGTACATAATGTAGTGCAATACAATGATGGTTGAAAGATGAAATAAACGTTCTTTAAGAACTTGATGTATCATCTTTATGCTCTTATTTTTCAATACAGTAAGTGTTCATCTTCAAATACGGCCAGCAATATACAACAAGAATTCTTGcacttcatttataaaaatcattaaagatttcacagtaaaaaaaaagtcctgaaCCACGACCTGAAGGGGGACTATTAAGATTCACTATTAATCATTAAACTCCTAACTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134800 lncRNA downstream 5191 4958383 ~ 4959411 (-) True G91022
TU134515 lncRNA downstream 131458 4829751 ~ 4833144 (-) True G90846
TU134506 lncRNA downstream 213634 4750432 ~ 4750968 (-) True G90842
TU134496 lncRNA downstream 265990 4690885 ~ 4698612 (-) True col13a1
TU134415 lncRNA downstream 379641 4560776 ~ 4584961 (-) False G90785
XR_006252371.1 lncRNA upstream 163553 5128512 ~ 5129707 (-) True LOC122356716
TU134865 lncRNA upstream 165392 5130351 ~ 5130949 (-) True G91066
TU134900 lncRNA upstream 296106 5261065 ~ 5262123 (-) True G91085
TU135101 lncRNA upstream 766297 5731256 ~ 5732678 (-) True G91210
TU135120 lncRNA upstream 958298 5923257 ~ 5923759 (-) False metap1
XM_043256063.1 mRNA downstream 8809 4931419 ~ 4955793 (-) False ninl
XM_043256062.1 mRNA downstream 8809 4931419 ~ 4955793 (-) True ninl
XM_043256066.1 mRNA downstream 8831 4931419 ~ 4955771 (-) False ninl
XM_043256065.1 mRNA downstream 20033 4931419 ~ 4944569 (-) False ninl
XM_043256111.1 mRNA downstream 60510 4837778 ~ 4904092 (-) True gbf1
XM_043255104.1 mRNA upstream 43613 5008572 ~ 5040509 (-) False sema4ga
XM_043255105.1 mRNA upstream 43613 5008572 ~ 5040361 (-) False sema4ga
XM_043255103.1 mRNA upstream 43613 5008572 ~ 5040360 (-) True sema4ga
XM_043255946.1 mRNA upstream 75605 5040564 ~ 5054042 (-) True slf2
XM_043255793.1 mRNA upstream 99339 5064298 ~ 5070193 (-) False wdr32
XR_006252267.1 other downstream 275434 4672966 ~ 4689168 (-) False LOC122356061
TU135397 other upstream 1260302 6225261 ~ 6225733 (-) False LOC122356805
TU135441 other upstream 1393242 6358201 ~ 6390715 (-) False sdccag8
unassigned_transcript_1925 other upstream 2166186 7131145 ~ 7131215 (-) True trnag-gcc_67
unassigned_transcript_1927 other upstream 2170113 7135072 ~ 7135142 (-) True trnag-gcc_69
TU135889 other upstream 3078606 8043565 ~ 8047901 (-) True G91775

Expression Profile