RNA id: TU135142


Basic Information

Item Value
RNA id TU135142
length 1436
lncRNA type sense_over
GC content 0.34
exon number 1
gene id commd8
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 5982518 ~ 5986979 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCAGTCCtatgattaaatacataaactcAAATACAAACACCCTGTCTGGTTCAGTGACAGTAAATTCTCCTTCAACATACTTGTGCACTGGCCTATAGCATGAGTGCAATTACAGAAGTCATACACGGATGATatgatactgtttttaaaaatactttttcctttttttggcaTTTGCTGTTGTAGGCATCTCAAGCCAAAAACACCATGTATGAATGATAGATGGCCTATCAAAAGTTAAATATGACTTCacttttatgtgtatgtgcgtgtattCATGCTGATTCTGGCTGGAGCGTGaatatgctttgtttttacattgccAGTCTTTGATTAGCATTAATGGAGAATTTCGTACTGAGCAGCTCATGTCCCAGTCAGATTGAAACAAAGAGTTGCAATGCAAGCAATTTATTTACATgccaaatgcattttgtgtgtatttctaaTATTATACTGAATATTAATGCAGGGCGTTGGAAAAGCCCTTGAAAGTACCTTTAATTTCGATTATCTATGGCACCCTTAAGTAATATTTGTTCTATAGAAAAGTGGAAATCCGTTCAGAATATTTCTACTCTGCTGTTGTATGTTAAACCctgtaaaatacatgtttttgttttttaaaggcaCAAGTTCAGCCATTAAgaagaaaaatctaatttgttaTTAAGTCCTATTAGCCATTTTGGTGAGCttgaataatatataactcACAGTGAATAGCACAGTTTAAAGCTAAATGCAATTGTGAAAGGTAAATACTGTGAAGTCACTTCCTATATAAATAGTTATAACTACATCCCTAAAACAATGCCCATATCTAAAATCATAGCTACATTTCGATTGCAATAATGTTAGGAATACTGAGTCGAATACTGAACAACAGGAACTGATATATCACTTTCCTGAAACCGTTTTGTCCTTTAAGCTCTTGCTAATGAATCtggattttatattttgggctttacagtataaaattcaACTGCTGCTATGAATGAAATATGCGGGATTTGTTGGTTCGTAAGAAAACGTAGAGAAAAACATGATGACATCATTCATCTTTCAATACCTGATATGttttaatgtacaaatttaCACACTGTGAGGACTCGTATCTTTAAACTCGTATCCTGCTTGTCATCATGTGTCGTCATGCTGATACATCCGTTTCTGGCAGGCTGACTTCATTTGATAATAGAGAAAAGTGTGTTACATATAGACAGATAATATTTGTTGAAGTGTAGTCTTAACCAAGCCCTATAAATACTGTAACCCAAATGGTGAGCTTTTTTGCCCATTTCTTAGTAGCAGAGTTATTAAAGTATTACTAAGACAAACAGGTTTAATCTACAGTATGTGATGTGTCTAAACTGGGGCAGAAGGTTTTCGTTTTAAAGGAATGTTCCAGGTTTTCGTTCAAATTAAGCTCTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135036 lncRNA upstream 28946 5954891 ~ 5956598 (+) True G91172
TU135032 lncRNA upstream 33027 5951230 ~ 5952517 (+) True lamtor3
TU135046 lncRNA upstream 57411 5927834 ~ 5928133 (+) True G91180
TU135045 lncRNA upstream 58796 5926358 ~ 5926748 (+) True G91179
TU135044 lncRNA upstream 59219 5924540 ~ 5926325 (+) True G91178
TU135152 lncRNA downstream 11463 5998442 ~ 6002062 (+) True G91250
TU135249 lncRNA downstream 267624 6254603 ~ 6261915 (+) True akt3a
TU135252 lncRNA downstream 267624 6254603 ~ 6358016 (+) False akt3a
TU135248 lncRNA downstream 292580 6279559 ~ 6291443 (+) False akt3a
TU135268 lncRNA downstream 383231 6370210 ~ 6370528 (+) True G91324
XM_043256152.1 mRNA upstream 33125 5951217 ~ 5952419 (+) False lamtor3
XM_043256229.1 mRNA upstream 38642 5936401 ~ 5946902 (+) True LOC122357047
XM_043254815.1 mRNA upstream 49960 5930197 ~ 5935584 (+) True lrit3b
XM_043256162.1 mRNA upstream 177668 5795240 ~ 5807876 (+) False nsd2
XM_043255826.1 mRNA downstream 91238 6078217 ~ 6087501 (+) True pprc1
XM_043255828.1 mRNA downstream 91411 6078390 ~ 6087501 (+) False pprc1
XM_043255888.1 mRNA downstream 101973 6088952 ~ 6101193 (+) True oga
XM_043255889.1 mRNA downstream 101973 6088952 ~ 6101193 (+) False oga
XM_043255892.1 mRNA downstream 114652 6101631 ~ 6103986 (+) True npm3
TU134595 other upstream 987648 4992327 ~ 4997896 (+) False si:ch73-49p17.1
TU134239 other upstream 1741503 4182499 ~ 4244041 (+) False G90660
TU134245 other upstream 1741503 4182499 ~ 4244041 (+) False G90660
TU134242 other upstream 1741503 4241132 ~ 4244041 (+) True G90660
unassigned_transcript_1924 other upstream 1913645 4071806 ~ 4071899 (+) True trnai-uau_4
unassigned_transcript_1926 other downstream 1144447 7131426 ~ 7131496 (+) True trnag-gcc_68
TU135767 other downstream 1849211 7836190 ~ 7838941 (+) False chchd1
XR_006252298.1 other downstream 1871719 7858698 ~ 7881483 (+) False zswim8
TU135961 other downstream 2319507 8306486 ~ 8310824 (+) True G91833
XR_006252358.1 other downstream 2679289 8666268 ~ 8683052 (+) False pcnx2

Expression Profile