RNA id: TU135249


Basic Information

Item Value
RNA id TU135249
length 7102
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id akt3a
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 6254603 ~ 6358017 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTCTTATAATTTATTGCAGTTTgcacacaattttaaaaatttcaccAACAGCACACCAAAAGTACAAAACTAAACAGCCTCATAATTTACTTCCCTTGAGAAAATGAAACATACTATGATTGTCAAAGCTAAATGTCTAAATCCATAAAAAGAACAATGTCAACATAGCAAAAAATCTCAGAAGGGAAGCAATTACATGTGAAGTTgaatcttcttcttttttttttttcttcttccatcCAGACAGCGATTGTCCTTGAATTCAacagatatttattattttctttcccaTACTCATTAGCCACAGAGTTTGAATTTGACAGAGTTGTTCTTCACACTGGGGTTCCTGGGTTTCAAGTAAACTAAAGGGGTATCTAATTTATGGATATGCTTCATAGGCCATTTCACAGCTTCATTTCCATTGaacaacaacgaaaaaaaaaaaaaaaaaaaaagtcagagaCAGACATCCAGTATTCCAGCGACAGTTTCCAGTTTTCACCCTCTGAGTAATAAGCTGATAACAGTAGTTTAAGGCGGTCAAGTACAATAGAagccaacaaaaaaacataaagaaaaagaaagcatagAAAACAAATCAACCCCGcagttgatattttttttccgtCACATTTTAGAGTGCAAAAGGTAAAAGTACCACCGTGCAAAACGCCGTGAGGAGCGTGCGCTGTTGGCAAAGCTCAACCTTTTCACTAGCCGTTGCACCAGCCAAATATATGGTAGGACAGCTCCTGAGGCCTGCGTAGGCCCGCGTGCCGCACACTCCTGTCCTGCTCCAAACATGTGCGGAGCCCCCGGCCCTCACTAACTAAAGTAGTTCAAGCATTTCAGCACTATGTGAGTGACCGGTCTACGTCTACAGCGCTAAGccatatgtttttcattttctttgttttttgtttttttttatttctctggaTTTGACaatgaaattgttatttttttgtgtgaaacaaacaaacaaacaaacaaaatgaacagaattCTCACgttgttaataaaacaaacccttgcaaattaaaagaagaaataaaacactttcaaaagaaacatttttagaaatcacAAATGCTGCAAAAAGTGAACAATCACAAATttatagatctttttttttttttttttttcagtgtaacaaAGTCAATTGGATTAAAGTTAATAATTAAGCATATACATATCAAAGGCCTCTTTTGCACATCATTCTAATTTCATTAAGCTTCAAAGGTGCAACCAACCTTGCCAAACACGTTCTAGTGaccaaaacaaaacgaaaaaaaaaacgacttatgtattgaacacaaacacacacacacacacacacaaaccactcAGATCAGAGTGTGTTGAGCTTTATGCTGTTTAAAGATCCTTCAGCTTCTCCAAATAGATGAGCGCTGCTGAGGACACCCATAAAGAAGAGCTGTACCATCAGCCACGCAAATGTGTCTTCATGGCAATCGAATCTGAAGCAAGTGCCAAttgaaaagataaataaataaattacgaACAGAGCCGACATGATTCAAATGACAACGGCCAGTAAACAGGACACTGAGACAAACAGCAGTTGAGGACCCAGCACTGGGAAGAGCAGCGCGAGGAGATGCTAGCAGGAGCCGCGCTAGCCTTCTGAACAATAAATGTAGCGATCCAGCCTCTGCTGACACCTGGCCCCTCGTTAACCCCCCGAATCCTACAGCGAGCCCGAACCCAATCGCGTCGCGCGTGTAGATACTGCAGCCTAACGTCAGTGCATTTCCACAATCTTCACagcccagaaaaaaaaaaactaaaaataaaaaaaacacctcaccAGAACCCCTCGGTTCGTTCTCTAGTAAGAGGAAAAAACTCAAATCTACCAAGGAATcaaattagttaattaaaaaatacactctCTGATGCAAAACAACAACGAAAAAGagtaagttaaataaaattcatgcaATTTCTACAGCGGTAATATtaaaggtactttttttttctcaacagaCAGGTGCCCTGACTGTAATGAATCAGTCAATTACAGTGTACAGCAATACAGCAAGTCACATCTTTTTCAATATACAGGTCAGACATCATGCAACAACAGATTCCGTTTTAAAAACGAAAAATCTTAATAAAACACTACAGAAATCGCTAGAAATGCAGCTGATGTAAAAACCAACCTCAGTAGCAAACGAGTGATGCAGAGACCGCAACTAAAATGCGAAAATAACTTCAAATCATATTAGgaaatgatagaaaaaaaaaatgcggcaactgatatgaaaaaaaaaaagaggctgtACATTGCATGAGTGCCTTGTTTGTCTTCCATCAGTCAAGTTTCCTATAACGAGTCAAAAATGTACAAGAGCTTAAGTAACGCAAGCTTAGAGCTTCCTCGTGGGATTTAAAGGACTGACCTGCTCACACActacgtgtgtatgtgtgcgtatgcgCATGAATACACATGCACGCACGGCCACAGTCACACATCAGGTATGTTATCTGCAAATTATAGTAGtgcactatatttatattttaatacacacacacatactcgaACAAGAGGTGAGTGTGTACAGGTAAAAATATGATCATAGTACCCGTTTAGTGTGTCCTTAGTTTTAAACTCCTCTGTGTATTACCTGAAATCTTCATATGCTTTTCATGGCAGGTGTTCCTTGAAATTTAGGAGCGTatacaaatactgtaaattatataCAGTTGAAAATCccaatgatttgtttttttctgtcagagTTGGTTACTGAGACCAGCACCCATGTTTTATAAAAACCCAAGgagagcaggaaaaaaaagaaaaagaaaagagacccTAAAGAGaccagaaaatatattaaaaggaaATCAGTAGTAACATTTTCATGTGCTAGTAAAGTGCAATTCAACAAGATTTGCAATGTACATACAAGAAAAATGACTGATTCGGACCCTTCGGCCGTCACTCCGCCCCACTCTTACCTTCACCTCTCTGCCCCAACAAAAAATGCCACTCAGATCTCTCTCATTAATTTAACAAGCAGTTCAAACAGTCTGCTATTAGTTCAGCTTTCATTTCCACAGTTCTTGAGAACTATCTTCCAGTGCCCAGTCTCTGACCGTGGGTAGATTGAGAGCCTCGCTCTTGACCGAAAGCGAGTTGACCAGTTCGCAGTGGAACTTGCGGATGTGTCGGTACAAGTCCCCTGACTGCGTGAAGCGCCGCTCGCACCACTTACAGGCGTGCGGCTTCTCGCGCGTGTGCACGACGGCGTGTCGGCTCAGGTTGTGCGAGTACTGGAAGCTCTTGCCGCAAGTAGTGCATGTGTAGGGCTTCTCGCCCGAGTGCGTCCGCTCGTGGCGCTTTAACGTGTACATGCAGGAGAAGGTTTTGCCGCAGATGGAGCAGGTGGGGACATTGACGTCGCCGGCCGGCTTGGCCCGTACGCCTTCCTGCTCACGGAAATGCGTGCTGAGGTGGATTTGCAGGATGTGTGGGCTGGGGAAGACCTTGTTGCATAAGGGGCACATGAAGATCTGAGTATGTGGAGCCCCCAGCATGCTGGAGACGTAAGGCAACAGGGAGGTCTCGACCCCAGCGGCCTCCTGCGCTCGCTCGCTGTCCCCTCCTAAGACGTCTGCGTCGTCGTCGCCTCCTTTGTCGTCCCGCTCCAGCTCGCTGGCCAGCGAGGCCTCGCGTAGGGCCGAGAGGTGAGCCTCCAGGCCCAAGCGCCGTTGTGCAACGAGGCTGATGTGAGTCCCGTTGGTGCTGGGCGGCTCCTTGACGCCGCTGTGCTCCATCTCGTAGTCGCCACTCACCAGCTCGTCATCGTCCGAGCCCGTGTCCTTTTCCACCTTGACCTGGACCAGGGCGCTCTGGAGGCTGTCTGGGGTCACAGAGCTGCAGAAGTACGGGTTGCTGGCCATGGTCTCCCCAGGACCTCCGCCCAGACCGGACTTGACGGAGAGGTCAAGCACGCAATCGGTGTCGGCGGAGACTCTTCGAGACACGGCTGAGCGACGGGACAGGGAGCCGGTGGAGCTGCTGGGGCTGCCGGCGGGAGATTTGCCAGCATCGGGGCCATGCGTCTCCGCCTCCCTGGGGCTGGTGGTGGGAGACGCGGTCCGATCGGAGGGCAGACGCATCCACATGCTCCCCGGCTCCTGAGGGCTATCCCGCTTGTTCTCCATGTCCTCGTCATCGCTCTGTAGCAGGTCGGCGGTGGCCGGCCGGCCCGTGCTCCCACCTTCCGAGAAGCTCTCCACCTTGTCCGAGCAGCTGGAAGCGTCCTCCTCGCGCTTGGTGCTGTCGGCCTCGGCCGTGGCCTTCTGCTTGAGCTTCTTCTTGCACACCTTGACAATGTCGTACATGTGGAGGTAGCTGGCGGCAGCCAGCACATCCTCCACTGGAAGCGATTTGAACTGGAGCTTTCCTTCGTACATGAACTCAAGCAGGAGAGCAAAGGCCGGGGCCGTGACAATGTCGCTGTTCAGATGAACAATGTCCCTTTTGTCTAGCTGGTCCTTGTAAAAGAGGTGGAAGTACATGCTGCATGAAGCCAGCACTGCACGATGGGCTCGGAACTGGGCATCACCGACCAGCACAGTGGAGTCACAAAGGAATCCCTGATGCCTCTGCTCGCTCAGACACTGTAGCAAATGTCTGCTGTGGTCTGGAAACTCCATGCTGTCTTCATAACCTGCAAAAGACCACAGATGTTAGTGAGGCTCGCTAGAACAACAATTGTTTTGTCTGCAGCTCTGTGTGGAACTTCTCTCTTTCCCACCAGCTCCGtcccctctccctctctctctctctttctctctctctctctctcgctccatGCACACAGATTATATATTAGGCTAATTGCATTTTCCTCAGTTGTGCACTTTAAAAGTACACagtattgcatttaataatacatttcacgctaacccttttaattaaaagtataaaagtaaatagcgcaaataaaaaaaaaaaaaatatcccgattgtaaaattaatttaaagcgATATCGCCGTACGCATCCTATCAGTAATGTTCGGCTATAATCAGATGGCGTGATGTAAAGAGCTGAAGTCCTGATTCCACAGATGCCTGCGCGAGAGAATCTTTCCTGTTTTTCCTCGCTGTGCTCCTGGAGCAGTTATTTATAATAACCCACTTTGGCCAGGACGCCAAGTATAGGTAACAGGCTTACAGGTACACAAACAGCTCACTATCATGGGCACACTGCATAAGAATACTAAGTACCGTGATCTCGGAGGTTACGACAACTGAGGTAGCAGAACATCAGCGTGACGCGCGTAATCAAAGACGGACAGTctgcaaataaaacatgcactaaaaatatacattatcttacacaaaataaattaaaatacacacaagcAATTTACGAacttaaaaaaagttgaaagtgaaataaacggaggaaaaaaaaaaaaaactcgaaGAAATCACACCTGTTACCCACGGGGACCGTTCCCGTCTAAAAAAATGCACCGGCGTCATGTTCAAGCAGCGGACTTAAATGAACTCATTTGAATCTTCATTTAAATCTGATTGGGATGGCAAGCCAAAGCCAGCCCTCTCCTCCCCCTTTTCCCCTCCCCAAATCTTTGGAGAAATGGAACATCCTCCCCAAAGAGGCGGTCCACAGCAGATTTACAATACAATCACTTTAAGTGCCCCGTAGTCCACATCAATCCTAATCCTTAAGAtggctaaaaataaagattGCAGGACAGCTCACAAGGTAGCAGCGATCAAATTAGGAGACTGGGAGGACAGAGAGGGACGGAGAAGGAGGCTTATGAACATCTGATCCAGCTGACTGAGACCATATGGCAGCTGCTGCCCAGATAAAGAGATTAAGACTAGGAGGAGTGCGATTACAGCTGTCTAGCCAATTCAGGCAGCTCAAATCTGCAAGTTCTAAATTAGTCcttacaaacaagaaaaaaaggaaagagttgAGCAAAAAGCCTGACGAAGGGACGTTCGGAAGAACGTCTGATTATATAAAGTTGCAGATTTATTTCTGCGTTTTCCCCTCGCTTCAGAAGATTAGGAATTTGGTTTAAATGGACCGAACATCTCGCCGCTCAAAGCAAAAACCGGTTTTAACAGCACGCACATATGTATATCTAAACGTGTAAGAGTTTCCGGTTTTAAAGCGGTAACACTACAATGAACTCCCTACCAACGCCACCCCGCACTGTCACAACACAGCAACAATTTGCCATTGAGAACGAAGTAACCCAACTGAGGACCtgcaaacaaacagaataaTCAAACGCTCGCCTGGAAACCAAAAAAAGTGTCACTCGTCCCCCAGCCTGGTTACACTACACCAGCCCCGAAATCCTTTACTTCCCATTTCGCACACTCTGGCGGCCGACAGCAGACACGCAAAAAAGACTTAACGAGAGCTCCCCATTCAAAACACATCCCCGTCGCCCGGACCCCCCGGTACAGTACCTGCAGTACGCATCAACTTGATTAAGTCCACTGTTGTGGTAGCGCCGGCTGTAACTCCCTTCGCCGAATCAATGAGAGGGTAGAGacgcgagagaaagagagagaaaatcaaaCTGTGAGGGACAGATGCAAAGTGGAGGAGATGTTGGAGGGGAATGCGATGCCTCCTCCTGCACACAGATCcgcacacacactaactccCAGTCTGTGCGTTAGAAGAAAAGACTGGGGGATGGCAGCCTGTCAGCTGCTCTGACATCATGTTCAGATGGAAATGCTACCTCCAGCTGTGCTCCTTTTAGTGCCATATGCTACTCCTCTACACTCTTGCCACCAGCCTCTCCTTTATACAACTTTGTTTCTCTTTCCCCCCCTCTTTAAAAACGGGAGGAAGGGAAGTGTTGTGAGGTGCTTCTGTAGAAAACTAGCCAATTCCCCCTTTTAGTTGTAATCTCTCAGCAAAGAAGAACTTGGAAATAGGTCCGTCTGAAAGCCGACACTTTTTTCTAACCTAGTTTCCTGCACTGAGAATTTAAATACCCTCAAGTTTTCTCTCTCCCCCCCCCCTCTCCTTCCAGTAACCATAAACAAAGGCCAGCACAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135152 lncRNA upstream 252541 5998442 ~ 6002062 (+) True G91250
TU135142 lncRNA upstream 267624 5985544 ~ 5986979 (+) False commd8
TU135036 lncRNA upstream 298005 5954891 ~ 5956598 (+) True G91172
TU135032 lncRNA upstream 302086 5951230 ~ 5952517 (+) True lamtor3
TU135046 lncRNA upstream 326470 5927834 ~ 5928133 (+) True G91180
TU135248 lncRNA downstream 17644 6279559 ~ 6291443 (+) False akt3a
TU135268 lncRNA downstream 108295 6370210 ~ 6370528 (+) True G91324
TU135295 lncRNA downstream 190829 6452744 ~ 6453076 (+) True G91343
TU135514 lncRNA downstream 431747 6693662 ~ 6699169 (+) True G91492
XR_006252288.1 lncRNA downstream 461365 6723280 ~ 6755554 (+) True LOC122356144
XM_043255716.1 mRNA upstream 12071 6227540 ~ 6242532 (+) True adss2
XM_043255718.1 mRNA upstream 12071 6234209 ~ 6242532 (+) False adss2
XM_043255487.1 mRNA upstream 42704 6210396 ~ 6211899 (+) True si:ch211-132e22.4
XM_043255486.1 mRNA upstream 44345 6184574 ~ 6210258 (+) False dctn1b
XM_043255480.1 mRNA upstream 44345 6187159 ~ 6210258 (+) True dctn1b
XM_043256082.1 mRNA downstream 17291 6279206 ~ 6358017 (+) False akt3a
XM_043256081.1 mRNA downstream 17292 6279207 ~ 6358017 (+) False akt3a
XM_043255429.1 mRNA downstream 134827 6396742 ~ 6429387 (+) True cep170aa
XM_043255430.1 mRNA downstream 134827 6396742 ~ 6429387 (+) False cep170aa
XM_043255431.1 mRNA downstream 134827 6396742 ~ 6429387 (+) False cep170aa
TU134595 other upstream 1256707 4992327 ~ 4997896 (+) False si:ch73-49p17.1
TU134239 other upstream 2010562 4182499 ~ 4244041 (+) False G90660
TU134245 other upstream 2010562 4182499 ~ 4244041 (+) False G90660
TU134242 other upstream 2010562 4241132 ~ 4244041 (+) True G90660
unassigned_transcript_1924 other upstream 2182704 4071806 ~ 4071899 (+) True trnai-uau_4
unassigned_transcript_1926 other downstream 869511 7131426 ~ 7131496 (+) True trnag-gcc_68
TU135767 other downstream 1574275 7836190 ~ 7838941 (+) False chchd1
XR_006252298.1 other downstream 1596783 7858698 ~ 7881483 (+) False zswim8
TU135961 other downstream 2044571 8306486 ~ 8310824 (+) True G91833
XR_006252358.1 other downstream 2404353 8666268 ~ 8683052 (+) False pcnx2

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00011515 True 2485 mRNA 0.49 2 NC_007124.7 11440389 ~ 11442935 (+)
grasscarp (Ctenopharyngodon idella) CI01180000_09154162_09158438.mRNA True 2261 mRNA 0.55 4 CI01180000 9153878 ~ 9158438 (-)