RNA id: XM_043254848.1


Basic Information

Item Value
RNA id XM_043254848.1
length 4813
RNA type mRNA
GC content 0.47
exon number 43
gene id lrpprc
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 6453531 ~ 6499573 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGGATGTCCTTCGCTTTTCCTCTCTGTGCAGGTTAAACATGGCTGCGCTCTTAAGATCAGCCCGGTTCCTTAAATGTTCACCGGTGGCGTTGCTTCAGGCCTTTGGAAACGGCAGACATGTACCGGCAGCTGGTCGTCTTTACAGTGGAGCGGTCGGGGCTACTCGTGCAGGGTTATGTGTCCATAAAGTCCCGGGACGCTTAAACGTAAACAGTTTGCTCTCATTCAGATCAGTCTTGCCCTGTGTGAGCTGTCATCAGTATAGTGTTGTCCCGGAGCAGAGGCAGCTGGTAAAGGATGAGCCCAGTGTGGCAGTCCGCACCAAGCAGGCTCCTTTTGACTGGGCTCTGGCCAAACTGGACAGCTCAATCCGAAGGACAGGCCGGGTCACCAAAACACTGCTGCTGCGCATCTTCCATGATGTCTGCAGAACAGGATGTCCAAACGGAAATCAAGCTCTGTTATTGCTGAGAAGCTGTGGCTCTCTGCTTCCTGAGGTTCCCTTGGCGGAGCGCATAGAGCTGTCACAACGGATCTGGGATGAGCTTCAAGCACTGGGCGCCCCCTATGATGTGAGCCATTACAATGCCCTGCTTAAGGCGTATCTGCAGAATCAGTTCAGATTCTCTCCAACCGACTTTCTTGCTAAAATGGAAGCTGCTAATGTTCAGCCGAACAGGGTGACTTATCAGAGACTAATCGCAGCCTATTGTGAAGTCGGGGACATTGAAGGTGCAAGTACGATCCTGGGCTTTATGAAGAGCAAAGATCTCCCCATAACGGAAGCTGTGTTCAACTCGCTAGTGACAGGCCATGCCCGTGCAGGGGACATGGACAGCGCTGAAGGCATCCTGTCAGTCATGAAAGGTGCAAGGATTGAGCCGGGCCCAGAGACGTACCTGTCTCTTTTAAAAGCGTATGCTGAGAAAGGCGATATTGATAAAATTAAGCAGACTCTAGAGACAGTGGAGAATGCAGATATCCTTCTGATCGACAGAGATTTGATGCAGGTGGTTTTCAGTCTGACTAAGGCCGGCCATCAGCAGTATGTGCCTGAGATTGTGGATAGGATGCGTCACGATAGAGGATATGTGCCAGATGCTATGAACCTCTGCTTGAGTCTGATTACTCACGGACATGAAGACACAGCGTTTTATGTGCTGAAGAGCTTCACCAACCTGCTGTCAGAGTCACAGACCGGTGACTCTCCAAACTTGGGAAACTTCTTTCTTCGCCACTGCGTCAGTATGGACAAGTCTGTGGAAAGCATAGTTGGGTTTTGCAAAGATCTAAAAGATTCAGGTCTGCACTCATCGCCACTGCAGTACACCCTTCAGTGTGCCCTGGAAGATAAAAATACCGGTATGGCTGTTGAGCTCATGAGAAGGATGAAGGAGGAGGGATTGCCTCTCAGACCTCACTACTTCTGGCCCATCTTCACTCATTaccagaaagagaaaaacattccCGGTGTTCTGCAAGTTCTGAGAGCCATGCAAGAATTGTCTTCTTCGTCAGACGTTGATACTTTTAGCATCTACATCCTGCCGTCTTTCCCATCAGCGGACAGTGCCCGCACCTCTCTGAAGAATGCCGGTATTGACGTGGATCCCAATATTTTGACTATGGCAGAAATACGAACGGAAACCTCACGTGGAAACCTCGCAGAGCTGTTCTCTCTGATGTCTTCATCTGCTGTTCCATACATTGACCTCAGTGTATTCAGAGGCACCCTGATCTCTGCATTCAGAAGGTTTGAGGATGTGGAGTGTATGACGAAGATTACAGAACTTCTCTTTAAAGACCCTCGGTTCAGTAATGCTGACCATAAAAATTCAGaaaatgtgGCCTACTTCCTTTACAGCCTGATTAATTCCATGACTGAGACAGAGGTGCGGTCCAAAGAAGAGGAGATTAGAGAGTACTTCGGCCTGCTTAAAAACATGAATATCATCATCTCACTTGAACATCTTTAGAGGATCAAGAACCTACTGGAGTCCTACAAAGTTCCAGGCCTTTTGAAGgatGTCTCTGCTCTTACGGAGAAAAATTTGGATGCTGGGTTGGATACTAATGCAACACAGCACAaagtatttggTTTTGAGGGGAAACTTTCATTACTGGAGAAGACCCTGGCAGAGCAGAAAGCTGAGGGCATACCAGTCAGTTCCACCCTCAAAAAAGTCATCTCTGCCCTGTGTTTCGAGGAGAAACTGGAGGAAGCTCTGGAGCTTAAAACTCAGTATGAAGCGGATATGACTCCTGCCTCATATGCCATGCTCATCAACCTGTGCTGCCGTCATGACAATGCTGAAGAAGCCCTCAAGCTAAAGATGGAATTGGCTCGCAGGGACTCTGAGGTCGCGCTGGATGCTTACAAGTATGTGGCCTTGGTCCAAGTGCTATCCAAGCACGGCAAGCTGGAAGACGCGATAGACATGCTGAAGGAGATGAAGGAGAAGAATGTGCAGTTAAGGGAGAACACGATCAGTTTGCTCGGCCAAACGATAAACAAGGCTGCATTGAAAGGAGATGCCAACACTATTCGACGCCTCCAGGAGACAATCTTCTCTTTGGGCCTGGCCAAACCATCCAGTGTCCTCTGCTCACCCCTCATCAGTTGCTATCTGGAGAGTGGGAACTATGAGGGTGCATTTGATGCCACTGTGGAGGTCCATAAACAATACAACCAGATGCCCAAAATCCATGACCTCATCTGTGTCCTGGTGGAAAAAGGAGATGCCGAGCTATTACAGAAAGTCATGGAGTTTTTAAGTCGGGAGCGAGGCGAGATGATGATGCTCTACGACCTTTTCTTTGCGTTCCTGCAAACGGGCCGCTACAAGGAGGCACGCAAAATCATCGAGACTTCTGGTCTAAGAGCACGCCCGACCCGTCTGCAGTGGTATGCAGAGAAATGCATTGCAGCCCAGCAGATGGAGCCCCTCGAGAACATGGTGGACATGACTCTCAAGTTGTTTGAGTGTGACAGAGATGACTTGTACTACTATTTGTTACGCCTCTGCAagAAAACTAATAACTGGCAAAAGGCTGAGGCAACTTGGATAAAAATGCAGGAGGAAAATTTGGCTCCAAGAGAGAGGACCCTGCGTTTGCTTGCTgatatctttaaaaacaataacaaggAGGTGCCTTTCGTGGTGCCTGAGGTGTGGTTTGAAGAGGATAAAAGTGAGCCTGAGATGTTTTTGGAGAAAGAAATGGTTCAGACTTCCTCTCGTATAGTTGCTTCACCCCTTAAAGGGGCCACAGTTGATGACTACAGACTTAAAATCCTGTCTCTTTGCAAGAAGAACAAAGTTCAAGAGGCCTATGACGTCCTGAAGAGTGCAGATAAAATGGGCATAGTCTTCAGCCCTGATCCATATGATAGCCTCATCAAAGGCCTCCTAGCCAAAGGCAACATTGAGGATGCTATGACCGTCAAGAACATTGCCAACGAACATATTCCTAAATTCAGATTTAGTGACACTGCCATCAACCTTTTCATCATCTCTCAGGTGAAGAGATGCCAGATGAAAGACGCCATAGAGACTTTAAAGGGCATGTTACAAGCTGACCAGCTGCCCACTCAGCTGGCCCTCACTCGACTGGTCCAGGGTCTCGCAAGTGAAGGGAACACACAAGGCATCCTGGAAGTGGAGGCCTTGATGAAGACTGTTGGCTTATTCAACCTGTCCAAAATGTTATTTGTCAATAATACCGCTCTCTCTCATATTAAAAATGATGACGTTGACAGTGCGGTGGAGCTGTTGGAGTCCTTTTACACCCAGAACACAGAGAGTGAGAAATCCAGTATTTATTATGTCTACCGCAAAGTCATAGAGGCCAACAACGATGCTGCCCTAGACAAATTGAGTGCCATGGCGGAAAGGCTCTGCAATCACTTTGCCTCCTACAGAGCCGCTACAGACCTTTTCCTGATTTACTTGGACACGGGCAGGACAGAAGAGGCCAAGTTCCTCCTGCAGCGCTGTGCGGCCATCAGCGAGCAGAAGAACGCGTTGTTCACGTTCATGTTCCGAGCGGCCCGGCAGCAGGGACAGGCTGCTAAAATCCTAGCTCTGTCTGAGATGATCCCTGACTTCACAGAGAAGGAGAATATCTACATACATTTGGTGAAATGCTATGGTTTAGAGAAGGACTTCAGTTCAGCGAAGGCTCTGTATGAGCGCATGCAGTCTGAGGGGGTGAAGGCTGATGAGTTGACTCTCAAGAGACTGGCACTAATATACAAGGAAGCTGGAGAAACCCCTCCCTTCGAAGAGCCTCCGGAGTCTTTTCATTTCTACGCGAAGAAACTGAAGAACCAGCAAACTGAGATCAACGAGTCGGTCGACAATTAAAAACAACCtcagctttttatatatatatacattcaaaaGATGTGCACAGCTTGTGTTATACTgcgactctctctctctctctctctctctctctctctctctctctctctctcttcatagtgatgtgattattttttgtttttttttgcccttcATAATGCTGTCATGATATGGttaaagtgtacatatatacaaataaatgtaaacccAAAACTTTAgtggcttttttttataatttattttggacATTTTCTTTCCCGAGGTGATTGTCACGTGAGTGACGTTGTATGAAAACGCACATTATGACTTCTGAAAATGCAAGTATGTTCACAGAAGGCGCAATAATACACATGGGGGGATATTCCCGATATGATCATACGGTCAATTTATGCTTGGTTATGTAGTAATGCATACTATATAATAAACATCTCGTTGGATTCATCGTG

Function

GO: NA

KEGG:

id description
K17964 LRPPRC; leucine-rich PPR motif-containing protein, mitochondrial

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135466 lncRNA downstream 5105 6446498 ~ 6448426 (-) True G91454
TU135418 lncRNA downstream 161328 6290881 ~ 6292203 (-) True G91420
TU135395 lncRNA downstream 245568 6206094 ~ 6207963 (-) True G91406
TU135382 lncRNA downstream 269534 6183634 ~ 6183997 (-) True G91395
TU135331 lncRNA downstream 352348 6099268 ~ 6101183 (-) True G91364
TU135475 lncRNA upstream 37028 6536601 ~ 6538368 (-) True G91459
TU135512 lncRNA upstream 187504 6687077 ~ 6687295 (-) True G91490
XR_006252424.1 lncRNA upstream 194089 6693662 ~ 6703923 (-) True LOC122357105
TU135536 lncRNA upstream 287694 6787267 ~ 6787607 (-) True G91513
TU135614 lncRNA upstream 379649 6879222 ~ 6879894 (-) True G91574
XM_043254850.1 mRNA downstream 9083 6433477 ~ 6444448 (-) True abcg5
XM_043255440.1 mRNA downstream 20503 6429382 ~ 6433028 (-) True dync2li1
XM_043256078.1 mRNA downstream 57105 6358322 ~ 6396426 (-) False sdccag8
XM_043256146.1 mRNA upstream 53915 6553488 ~ 6560661 (-) True prepl
XM_043254638.1 mRNA upstream 220488 6720061 ~ 6722866 (-) True six2a
XM_043255739.1 mRNA upstream 289259 6788832 ~ 6840561 (-) False srbd1
XM_043255740.1 mRNA upstream 289259 6788832 ~ 6840463 (-) True srbd1
XM_043255741.1 mRNA upstream 289580 6789153 ~ 6840561 (-) False srbd1
TU135441 other downstream 62816 6358201 ~ 6390715 (-) False sdccag8
TU135397 other downstream 227798 6225261 ~ 6225733 (-) False LOC122356805
XR_006252268.1 other downstream 1764363 4672966 ~ 4689168 (-) False LOC122356061
unassigned_transcript_1925 other upstream 631572 7131145 ~ 7131215 (-) True trnag-gcc_67
unassigned_transcript_1927 other upstream 635499 7135072 ~ 7135142 (-) True trnag-gcc_69
TU135889 other upstream 1543992 8043565 ~ 8047901 (-) True G91775
TU136576 other upstream 2615520 9115093 ~ 9115551 (-) True G92267
TU136940 other upstream 3686188 10185761 ~ 10190510 (-) False LOC122356841

Expression Profile