RNA id: TU135555


Basic Information

Item Value
RNA id TU135555
length 269
lncRNA type read_through
GC content 0.32
exon number 2
gene id G91529
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 6815010 ~ 6861516 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttttttttttttttttttttttttttttttttttttttGTCCATGATAGtgcagcttttatttaaacggcataacaaatacataaatcaaaacaaattcCCCTCTAATAACTGCCAACATACTGATACATAAGTCTATAAATAGTCATTTTGGACACGGATTATGCGCTTGCTCGATTTAAGTGCTAAGATCTGCTTGATCTGTCAGTACCAGTAGTTTTCAGTTGACCTTCTCGAAGTATTCCTTTGAGCCAACCGGAGTTGGCTTa

Function

GO:

id name namespace
GO:0042440 pigment metabolic process biological_process
GO:0042168 heme metabolic process biological_process
GO:0046148 pigment biosynthetic process biological_process
GO:0033013 tetrapyrrole metabolic process biological_process
GO:0033014 tetrapyrrole biosynthetic process biological_process
GO:0006778 porphyrin-containing compound metabolic process biological_process
GO:0006779 porphyrin-containing compound biosynthetic process biological_process
GO:0006783 heme biosynthetic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252288.1 lncRNA upstream 59456 6723280 ~ 6755554 (+) True LOC122356144
TU135514 lncRNA upstream 115841 6693662 ~ 6699169 (+) True G91492
TU135295 lncRNA upstream 361934 6452744 ~ 6453076 (+) True G91343
TU135268 lncRNA upstream 444482 6370210 ~ 6370528 (+) True G91324
TU135252 lncRNA upstream 456994 6254603 ~ 6358016 (+) False akt3a
TU135574 lncRNA downstream 81051 6942567 ~ 6942795 (+) True G91545
TU135639 lncRNA downstream 185425 7046941 ~ 7047247 (+) True G91594
TU135660 lncRNA downstream 234638 7096154 ~ 7103000 (+) True LOC122356719
TU135661 lncRNA downstream 234638 7096154 ~ 7103522 (+) False LOC122356719
TU135662 lncRNA downstream 234638 7096154 ~ 7102588 (+) False LOC122356719
XM_043256328.1 mRNA upstream 107618 6704087 ~ 6707392 (+) True six3a
XM_043256255.1 mRNA upstream 160777 6561232 ~ 6654233 (+) True camkmt
XM_043256147.1 mRNA upstream 261684 6545507 ~ 6553326 (+) True slc3a1
XM_043255874.1 mRNA upstream 271781 6516883 ~ 6543229 (+) True ppm1ba
XM_043254849.1 mRNA upstream 363502 6444614 ~ 6451508 (+) True abcg8
XM_043255495.1 mRNA downstream 2630 6864146 ~ 6867334 (+) True sfxn4
XM_043255490.1 mRNA downstream 11718 6873234 ~ 6885961 (+) True eif3s10
XM_043255491.1 mRNA downstream 11718 6873234 ~ 6884458 (+) False eif3s10
XM_043254684.1 mRNA downstream 28997 6890513 ~ 6895703 (+) True emx2
XM_043254683.1 mRNA downstream 29010 6890526 ~ 6894729 (+) False emx2
TU134595 other upstream 1817114 4992327 ~ 4997896 (+) False si:ch73-49p17.1
TU134239 other upstream 2570969 4182499 ~ 4244041 (+) False G90660
TU134245 other upstream 2570969 4182499 ~ 4244041 (+) False G90660
TU134242 other upstream 2570969 4241132 ~ 4244041 (+) True G90660
unassigned_transcript_1924 other upstream 2743111 4071806 ~ 4071899 (+) True trnai-uau_4
unassigned_transcript_1926 other downstream 269910 7131426 ~ 7131496 (+) True trnag-gcc_68
TU135767 other downstream 974674 7836190 ~ 7838941 (+) False chchd1
XR_006252298.1 other downstream 997182 7858698 ~ 7881483 (+) False zswim8
TU135961 other downstream 1444970 8306486 ~ 8310824 (+) True G91833
XR_006252358.1 other downstream 1804752 8666268 ~ 8683052 (+) False pcnx2

Expression Profile