RNA id: TU135660


Basic Information

Item Value
RNA id TU135660
length 5960
lncRNA type sense_over
GC content 0.37
exon number 5
gene id LOC122356719
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 7093144 ~ 7147218 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAAAGGTTATTGTTTTATcttcacagaaaaataattttgatattgGTTGtggaaaagcacaaaaaaaaatttagtaaAAGActgatttaatgtatttttttcatttgagaaaTAAATTCCTAATGTGACATATATGTAACatcaaaaaagtattataaacgTCCAGTGTcatatatatgtaacattacAGATCTTTCACAAGGAGGGGTTGTATATGTACAAAAACAACTGCATAAACATGTTAGAAGTGGTccatttgttctgttttatatgGCCCATAATTTTCCTAAGAAGAAGTAGACATTACTTTTAATTCAGTTAGGattcataaaattacaaaagtgGTAGTAAAGACATTACTACAAACGattattacacaatattattgttctatggtatttttcataataaatgcattttggtgagaatttgacttttattgtttgcttGTAATGGtatgaatatttcatgaatGGTGTGGTTTAAATTTCCAATGGTAGTGTAGCCAAACAAATAGCCTTAAACTCAATATAAACCTCAACCTTTCATAGAAGACAGGTGTTATCTGTGGTGTCGATCTACTTTCTTTTGGCAGGGTGCTGGAATTGCTAACAGCGACAGACCCCGGTCTCATAAAACTTGATGAGGCCAAATCAGATCAGCTACTGGGCCTGACCAACAATTTACTACTGTTTATCCGCTCACAGATCCCCATTGCTAAGAGGCTGCTGAAGAGTTGTGAGTAACTGATGATCATTTGCATGAACAAATTGCAGCAAATGAATGTTACTTTAAGCAAATAACAATAGAATTTCACATTCTTTCAAGTATATAAACCATAACAGGACATGCTTTAACCGCAACCCATAAGCATTACAATTagggaaacaacaaaacatttttttataattaaaacttattttaactaGAGCACCTCTATTTGTGAAACATCTTGTCATGCACAAGACGCCGCAAAAAAAGTAGCacagtgaaatgaataaaaaggcaTTCTTTGTGAACAGTTAGGGCATTTTTGAACCCATCTTCATTTTTCAGATTCTTCAGAAGTGGTCCTGGACCCTTCCACTGCCCATCCCAAGCTGATTATTTCATCTGAAGGGGACTGTGCCACTTTCACAGATCTATGGCAAGATGTCCCTGAGCATGAGGGACGCTTTGACACCACCCTGAACGTCTTGAGCATCCAATGCTGGAATTCTGGTCACCATTACTGGGAGGTAGATGTGAGTGGAAAGATCTACTGGGAACTGGGTCTCACCTACCCATCCATCTCAAGAAAAGGCCAAAAGGAGGACTGCTGGCTGGGCCGGCATGCTGAATCTTGGTGCCTGGAGTACTTTGATGGAGACTACAATGCTTGGCATGCAGGTACCGCTCATCCTTTGCCCATTTCAACCTGCTTCCATCGGATAGGGATCTTCTGCAGCTTTCCTGGAGGTCTGGTGACATTTTTAGGGGTGGATAGCATGACGCCGCTTTACTCATTCTGTGCTGGGACATTTGCAGATTCTCTACACCTGGCTCTTTGTCCAGGTCATGATCTTCAGGGGACGAACTCAAAGCCTGTTAAGATCTGTCGACCATGATCATCTTTAAAACTCATACTTAAATGCATATTGtattatttggaaaataaattagGCCTTCCTAGAACAGATTAGTTTCATTTGACTGGCTTTGTGCAGATTAgatttgttagtttgtttttttaagcttaaagtaaaacatcaaataaaacagtTGATTCAACTGCACTGCAAATCTTCAACAAATTGGATTATTTAATAAGAATCAGCACCTCGAAATGGTGTGGTAAAAGATATGAAATATACATATGCCTGCCACATGTACAATACGTTTCCAAAGTATAGGGTcagcaataatatttcaatattccTAATATTCTCTtgtgctcaccaaagctgcatttatttgacaaaaaatacagttacaaataatattgtgaaatgttattacaatttaaaataacagttttctattttaatatattttacaaatggaTCACTCCAGttttcattattacattatccttctaaaaatcattctcatttgctcaagaaacatttcttattattatccaTGTTGAAAATAGTTTGCTGCTTAATTTTGCGTGGAAACTGAGATACATTTActtcaaaagtattttagaaGTTTAAAAGAccagcatttattaattcattttaacaacCTCAATaaagtttgcatttattaagtttgttactgtaattttacatgTATTCAATTCATCATCGCAGagcaattaatacatttatttcctAAAAACTgacaccaaacttttgaacattacAGCGTTAAGATAActagaaactaaaaaaaaagtgtgtttgttaaatattcaaataaaatgaagtatTTATCCCAGTGTCACGCACTGGGGGAGGGGGAGATTCCACAATGACAtaagattttttaattcatcagaAGAATTATCTCAAGCATTGCTGGTAGATCAGATTACATAACTACTGGTTAATATTTCATAGACATGCTACTGTGGGgcactgatttttttattgatccAATCCAAATATTTAAGGACTCTGGTATAGACACCAGGCTTGTTCTTCTCGCCACAACTGTCTCCCCAGCTCACTATACCATAGATATAGTGTGTTTGATTTCTTTCGCAGGTTAAAGGCCCACCAGAGTCACCCTGCCACAAAGAATCCACTCCTCCCTTGAGATAGCCAGCACAAAACATGCCGTCATCCAGCAAAGATGCATACACTTTATTGCTGGAACAAGCCTCCTGAGAAATCAGCAAAACCTGTGCATCAAGCAAATGCATGGAGCCATACTCTGCTACAGACAGGAAGGGAAAGAGAACAGATTCAGTCATTTCATAGTTCAACACGAATTCAGAAAAAGAAGTATGGAGACATACACGTCTCTGTGGCTCCCCATCCAGAAATTCTGCATTCTGTTCCATCTGCAAAAGGTTCTTTGGGCAAGCAGGCGGCCTTCACAAACTGAGTTTCCTTACCACATTCTCCATTAGTAgctttcagttttaataaagcTACACCacaagaaagaataaaaaagcaaatacaagaaaataaaaactatagacTTCATAACGGTGTAAGCTTATTAACATTTTGGggtcttttgttttgaaattctTATCGGGCTTTTACTTTGAAATTATTGTTCCTTTGCCCTTGTCTGTGATCTTTTTTGATCTTTTTCTGCATTAATCTAGGGGTTTCTCATATcgtgttgtatttttattaaaatgattgcctaaataaagtaaaataataaagtagagcttttagataaatatttttttttatgatacacCAACACTGCATTATGGGTATAATCTAATACCCAGTGTACTCTACTTATTGCAGTATGGGTTTGGGTGAGTACACTACATACTCTTAACTAAAAATGACTGGCACTCAAAATAGTGCACAATACTATAAGCTGGTGGCAACAATTTGCCTAcatcaaaaaaaacacaagctgaACAAAAAGCACCCGACGATTCACTAGTCATCACTAATAACCTACTCATAAACTTAACATTTTCCTTAAAACTGCTTTGCAATGATTTATATCATGAAAAGCGTTACACttcaattaaactgaaaatatacattACTCACCAATATCGTTGTAGACGACGTCAGGGGTTTCCTTGAACTTCTCATGGATGATAGTGTCCTCAACCAGCACAGTCTGATCTGTTTGCTCCTTTTGTATCAAATTTAGTCCTCCCAAAATAACTCTGTAATCATGCTTTTTATCACTGTACACAATACAGTGGGCAGCGGTCAGCACCCAACAAGACTTGATAAGGGTGCCTCCACAAATATGCCTGTACTCTTGGATGGATCCCTTAGGCCTAACCTGTACTGATACTTGCCATGGGTGGGCTCCAGGAATAGCTTTAAGACCCCAGTAAATCCGGTTTAGTTGTTTTTTCGGCTCAGGTATACCACATGAAAGAAAATCCCTTGTTAAAGTGTCATTCTTTGGAAATTTGGTTGGTGGGACAGGAGTAATGGCTATTTGGGCTGAACCCGTGCTCTCTGGGGTTATGCTGCCATCTGGTAGGTGACATTCGTGGAAAGTGCAAAGTATGAGGATTTGTACAGATTAGAGTTTGACATGGCTATAAACAGCTGTTAAATAAACTGGTTAATATTAAGTAACTTTCACGGCATGAGCATACCTTGGTGCAGTTTTTATcgagacaaaaaaatatgtaccaacaagtacatatcactgcagttttctaaagaaataaacactagaggcagtaaaactcagacgccttttattccttttcgcGCAATCACTTTAAGAATATCATGATAcgactttaaaataataataatatgctagGATTTTGAAaagtgatgcttttgaatgttagcattacacatatccagcttcatatctatgggtttatATAGACTGTAAGTTTACTTGAAAGGCAACGAGGTCTTGTTTGAGTAACTAAAAtctaaaaggaagttgaaatggaaCGGTTGCATCAAcgaatatgtttttatatcagtttaacactatcgggtaggtttagggttgaattTAGTGTAGGGTATATGTCCAACATGACAGagcattcatttttagcaacagtaaatggatatttcaattctgaactgcCGCTTTCCATACAATAtcagtgtaataaaaatatgcaaggGTTCAGTGaacattattttctttgaaactgcagtgaaatgtGCCTTAGTATGTAAAAACAGCATTGCATACAGaggtgcatatttttatgagaccaggttgtaaTATTGACAATTAAGACTGGAATACACAACTTGTCTGAGGGAACAGTGGTGGCATTAAATGAAAGCCACATTTCacccaaatgtttttaaagcaattgTACCTTAAATACATGTTTTCAATTCACTGGTTCAATAAATGATTCACTACTTAGTACAGTAAAAAAGTCCTTGTGCTGTTGGACTAGTACACTCTCagcaaaataaattcaaaagaacTAACAATTATACTAAGAATGATCACTAACGCTACAGCTTTTGGTTTAAACTTTCAATGGAACACAACTGGAGTATAAACTGTGCTACAGCATTGTCATGGCGCCTGGGTAATGATGAGGAATTCTTACCTGTCTTAGCTGGTACAGTCGGTTGAGGAGTAGTTACTTTTGGTGAAATATTGTCTGTGGTGGGTCGAGCTTCAGCAGTGGTGGGCGCTATTTTTGTAGTAGTTGTTGCTGTGGAAAAAGTGCAGCAATAGCTAAAAATGGAATTCGATGCAGATTTAGCGACGTTAGATCATGTCATTTAATACATCTACTGGGTCATAGTGGTTTCAAAGATacagttcttcatttattctTCATTCAAATGACTCTAAAGGCTCCTTAATCTAAAAGGTTAAAGTCTGCTGTCTTTCTGAGTTCATTAcggaaatgtattattttagtaacCACACTGTGTTTTTATCCTCAATCTTACCAGGTGTGGGACATTTTCTGACATCACAATGATCCCATCGTAGTTTCCTGTCCTTCTTTATAAAGCACCATGGCTTCTTATCTCCATCAGGGTTTGCAGAAGTTATGAGGTCCCAGGCCTTCAGTAGATGTAAATGCCACTGAAGGAAAAACTCCTTTATCCAGAATGAAGTCAGAGTTCCAGTCGAGACACTCATCCCCATCATCTGTCTCAGACACCTTCCCTCTGTATGACTGTCCATCGCCTTCGTAGCAGTCATCAGGGCCTGGGGATACAGCCACAGCACGGTATGGTGTCATGAAAaCTACTTGACAGTATTGTCCACTGTAACCATCGGGACAGACGCAATCAAAATCAGCATCATCTACAACGCACCTGCCGTTATTCTGACAAGGGTTTGGACTGCATGGAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135639 lncRNA upstream 48907 7046941 ~ 7047247 (+) True G91594
TU135574 lncRNA upstream 153359 6942567 ~ 6942795 (+) True G91545
TU135555 lncRNA upstream 234638 6815010 ~ 6861516 (+) True G91529
XR_006252288.1 lncRNA upstream 340600 6723280 ~ 6755554 (+) True LOC122356144
TU135514 lncRNA upstream 396985 6693662 ~ 6699169 (+) True G91492
TU135739 lncRNA downstream 680640 7783640 ~ 7787307 (+) False sh2d4ba
TU135745 lncRNA downstream 706871 7809871 ~ 7810104 (+) True G91673
TU135763 lncRNA downstream 720282 7823282 ~ 7825341 (+) True G91681
XR_006252393.1 lncRNA downstream 1005341 8108341 ~ 8111278 (+) True LOC122356873
TU135927 lncRNA downstream 1089326 8192326 ~ 8194318 (+) True G91809
XM_043254684.1 mRNA upstream 200451 6890513 ~ 6895703 (+) True emx2
XM_043254683.1 mRNA upstream 201425 6890526 ~ 6894729 (+) False emx2
XM_043255490.1 mRNA upstream 210193 6873234 ~ 6885961 (+) True eif3s10
XM_043255491.1 mRNA upstream 211696 6873234 ~ 6884458 (+) False eif3s10
XM_043255495.1 mRNA upstream 228820 6864146 ~ 6867334 (+) True sfxn4
XM_043255880.1 mRNA downstream 5678 7108678 ~ 7293308 (+) True atrnl1a
XM_043256416.1 mRNA downstream 262522 7365522 ~ 7471201 (+) False ccdc172
XM_043256413.1 mRNA downstream 262522 7365522 ~ 7394789 (+) False ccdc172
XM_043256414.1 mRNA downstream 262522 7365522 ~ 7372295 (+) True ccdc172
XM_043256270.1 mRNA downstream 375034 7478034 ~ 7721812 (+) True LOC122357079
TU134595 other upstream 2098258 4992327 ~ 4997896 (+) False si:ch73-49p17.1
TU134239 other upstream 2852113 4182499 ~ 4244041 (+) False G90660
TU134245 other upstream 2852113 4182499 ~ 4244041 (+) False G90660
TU134242 other upstream 2852113 4241132 ~ 4244041 (+) True G90660
unassigned_transcript_1924 other upstream 3024255 4071806 ~ 4071899 (+) True trnai-uau_4
unassigned_transcript_1926 other downstream 28426 7131426 ~ 7131496 (+) True trnag-gcc_68
TU135767 other downstream 733190 7836190 ~ 7838941 (+) False chchd1
XR_006252298.1 other downstream 755698 7858698 ~ 7881483 (+) False zswim8
TU135961 other downstream 1203486 8306486 ~ 8310824 (+) True G91833
XR_006252358.1 other downstream 1563268 8666268 ~ 8683052 (+) False pcnx2

Expression Profile