RNA id: TU135889


Basic Information

Item Value
RNA id TU135889
length 1431
RNA type TUCP
GC content 0.51
exon number 2
gene id G91775
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 8043565 ~ 8047901 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTTACATGCAGGCAATCACAAGCTGTGGCTTTAAGAACACATTTACAAAAGCTAAGCAGGTGCTCGTAACAGTATATTTGCAGCCAGTCGATCATCAAGTGCAATGATCTTCATATACTCACTTGCTTGTTTTGCTTTATCCATGTATGTTAATGTGAGTTCCTCATCCACTGGATTGTCAACTGGCCCAACCATGGGTACCAGCTGAGTACGAGAGCTCAACATAAGAGCTTCTTTGGCTCTCTCTGGAGAAACCAGTGGGGGAACGTTTGTGGGCTCCTGGAACCCACTGTCCTCTTCCATTAACCCTTCTCGTGGGTTTTGGTCATCCGCGCTCATGGATGAGGTCTCGATGGAGGTCTGAGAGGACCAGGCTCCATGCGGAAGGGGTTGGTAGATTACTTCTCTGCGAGCTACACCAGGCAATGCATCCTCTCTTTCTTTAGGCCCCAGAAGATTGTAAACTTGGGCATCTGAGGCACTGTCATACCCACTCATTTCTGAAGTCTCTGCTCCTTCTGGTGAAGCTCGACCTGCTTTGCCAGGTGAATTGCTGGGACTACGTCGTTTTGGTTTACGTTGCCTCTCATGAGCAGCCACGTCTGCATCGCTGTCTGTTTCTCCGTAGTAGGCCTCACTGCCCGGTGGAGAGGTCAATCCACTGCGTCCGGTCGGGGACATCATGGATCCGCGGTGGATCTGCCGCACACTGGACTGGTGAGGTCGGGAGCTGGATGGAGACATGGCCCTAATGGCAGCACGGTACTCTTTATCAATGCGGGGAGAAGGAGCTCGAGCAACCAGAACCACCGACTGGAAGCCAGCCGGTGTCCTGATAAACATGTAAGAGGGTAAAATAGCACAGGGCTGGTCAGAAACAGTAACTCACAACAACCCTGGCTTGGAGTTAATACAGTCACTTACTTTCAGCTCCCATTTGAGCTAAACACACACTTTGGCATTGAAAATGGAAAGGACTTACCTCCTAACCCGAATGTGTAGTGTTCCTGGCATGCTGTCGATCAGGTTCATGGCCTGGGCATGCGACAGACTCCCACAGGAATTCTCATTGATGGATACCAGCTCATCTCCCTCACGCAGACCGGCACGACATGCTTTACTTCGCTTGCGCACCTGGCAACCTGCAGAGGCTTCTGGTGCTCGATTCCTCCCTGTAGTCTGAAGCCCCATGGTGCTCCTCCGGATAGGGTGATGATAACCTCCTCAGCCACCATGGTGCGGTTTGTGCTTGTGTCTTTAATTCAGTTTGTTGGCCTGGGGGCCCTTAGTACATACGGTCCATGTTATTTCAGGGCCCCCTTAGAGAAGACAACTACTACTGCAACTGTGTCCTAGGTTTCCTTCAAGTTGCTCTTGCAAGATTACGAGCTCACATGGATCCCCTCCCACTCCCTGAGCTGGATGCTGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135882 lncRNA downstream 2347 7997680 ~ 8041218 (-) True G91769
TU135856 lncRNA downstream 59249 7983946 ~ 7984316 (-) True G91760
TU135853 lncRNA downstream 62859 7978820 ~ 7980706 (-) True G91758
TU135810 lncRNA downstream 233461 7809860 ~ 7810104 (-) False si:dkey-191g9.7
XR_006252306.1 lncRNA downstream 997990 7017223 ~ 7045575 (-) True LOC122356287
TU135912 lncRNA upstream 83342 8131243 ~ 8131848 (-) True G91796
TU136044 lncRNA upstream 109357 8157258 ~ 8167932 (-) True G91889
TU136047 lncRNA upstream 120836 8168737 ~ 8222615 (-) True G91891
TU136081 lncRNA upstream 219865 8267766 ~ 8268073 (-) True G91916
TU136169 lncRNA upstream 387125 8435026 ~ 8435920 (-) True G91960
XM_043254608.1 mRNA downstream 214353 7818743 ~ 7829212 (-) True si:dkey-191g9.5
XM_043256391.1 mRNA downstream 227186 7809849 ~ 7816379 (-) False si:dkey-191g9.7
XM_043256390.1 mRNA downstream 227186 7809849 ~ 7816379 (-) True si:dkey-191g9.7
XM_043256017.1 mRNA downstream 234250 7806576 ~ 7809315 (-) True sprn
XM_043256016.1 mRNA downstream 241387 7798510 ~ 7802178 (-) True elovl6l
XM_043255406.1 mRNA upstream 142458 8190359 ~ 8215972 (-) True mmrn2a
XM_043254620.1 mRNA upstream 177497 8225398 ~ 8235698 (-) True glud1a
XM_043255652.1 mRNA upstream 208487 8256388 ~ 8287519 (-) True psda
XM_043255653.1 mRNA upstream 208487 8256388 ~ 8284832 (-) False psda
XM_043255658.1 mRNA upstream 239638 8287539 ~ 8291145 (-) True LOC122356679
unassigned_transcript_1927 other downstream 908423 7135072 ~ 7135142 (-) True trnag-gcc_69
unassigned_transcript_1925 other downstream 912350 7131145 ~ 7131215 (-) True trnag-gcc_67
TU135441 other downstream 1652850 6358201 ~ 6390715 (-) False sdccag8
TU135397 other downstream 1817832 6225261 ~ 6225733 (-) False LOC122356805
XR_006252266.1 other downstream 3354397 4672966 ~ 4689168 (-) False LOC122356061
TU136576 other upstream 1067192 9115093 ~ 9115551 (-) True G92267
TU136940 other upstream 2137860 10185761 ~ 10190510 (-) False LOC122356841
TU137394 other upstream 2877043 10924944 ~ 10935331 (-) True G92819
XR_006252282.1 other upstream 3153045 11200946 ~ 11218985 (-) False rassf4a
XR_006252349.1 other upstream 3478279 11526180 ~ 11531309 (-) False zdhhc16a

Expression Profile