RNA id: TU135971


Basic Information

Item Value
RNA id TU135971
length 546
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G91843
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 8305568 ~ 8308919 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTAAATGCATTACAGAGAAACATTTGATTATATTGCAGAGTAACACATGAATAACTAGTCTATACATTGTGAAGAGAAGACTGTCTTATGTAGTGTAATACTTACATTCTCTATGAGACATATTGCAGCAGGATTACCTTTAAAAGGCACATTAGTAAAAGCATCAACAGTAAATATTGGAATCTCCATTGATTACAGCTCTTCagctctgtttttttcttcGATGTTTTGAGTATTTTTAGTGCTGTATTTGAGACCGAGGTAGACTTTGACCCTGATGACATAGCAGCTCACTTCAACTTTAAAGGTACAGGCTCAAGAtttagaaaagtatttttactgtgaTGTGATCCATAAAATAGAGTGGATGAGATAATAATGgaaatttgttattatataagaaaaaaagttatcagtgtctctgtgtgtcactgtagcaccattttggagaatatcgaCTGCATGTAAACTGTATGCTCTTCTGTATCAGCCGCAACACAGGGATACGTTTTCCATGTGTATgtatgctttgatttgaacgGAAA

Function

GO:

id name namespace
GO:0006898 receptor-mediated endocytosis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135970 lncRNA upstream 188 8304948 ~ 8305380 (+) True G91842
TU135956 lncRNA upstream 22981 8282155 ~ 8282587 (+) True G91829
TU135955 lncRNA upstream 23567 8281571 ~ 8282001 (+) True G91828
TU135953 lncRNA upstream 34174 8271162 ~ 8271394 (+) True G91826
TU135952 lncRNA upstream 35987 8269311 ~ 8269581 (+) True G91825
TU135964 lncRNA downstream 359 8309278 ~ 8315456 (+) True G91836
TU135967 lncRNA downstream 4195 8313114 ~ 8316412 (+) True G91839
XR_006252367.1 lncRNA downstream 27376 8336295 ~ 8338716 (+) True LOC122356687
TU135989 lncRNA downstream 27732 8336651 ~ 8338053 (+) False LOC122356687
TU135992 lncRNA downstream 34205 8343124 ~ 8347157 (+) True G91855
XM_043255654.1 mRNA upstream 4823 8291171 ~ 8300745 (+) True dna2
XM_043254623.1 mRNA upstream 49470 8238414 ~ 8256098 (+) True nfkb2
XM_043254621.1 mRNA upstream 80317 8223770 ~ 8225251 (+) True zgc:193505
XM_043255410.1 mRNA upstream 82941 8215939 ~ 8222627 (+) True sncga
XM_043255659.1 mRNA downstream 10579 8319498 ~ 8324207 (+) True hnrnph3
XM_043255660.1 mRNA downstream 10579 8319498 ~ 8324207 (+) False hnrnph3
XM_043255661.1 mRNA downstream 12202 8321121 ~ 8324207 (+) False hnrnph3
XM_043254681.1 mRNA downstream 54078 8362997 ~ 8368788 (+) True tacr2
XM_043254903.1 mRNA downstream 113028 8421947 ~ 8435924 (+) False pik3ap1
XR_006252298.1 other upstream 424085 7858698 ~ 7881483 (+) False zswim8
TU135767 other upstream 466627 7836190 ~ 7838941 (+) False chchd1
unassigned_transcript_1926 other upstream 1174072 7131426 ~ 7131496 (+) True trnag-gcc_68
TU134595 other upstream 3307672 4992327 ~ 4997896 (+) False si:ch73-49p17.1
TU134242 other upstream 4061527 4241132 ~ 4244041 (+) True G90660
XR_006252358.1 other downstream 357349 8666268 ~ 8683052 (+) False pcnx2
TU136262 other downstream 430154 8739073 ~ 8740089 (+) False sf3b5
TU136388 other downstream 852642 9161561 ~ 9164114 (+) True zgc:153981
TU136946 other downstream 1926997 10235916 ~ 10249725 (+) False LOC122356813
XR_006252428.1 other downstream 2020225 10329144 ~ 10329279 (+) True LOC122357143

Expression Profile