RNA id: XR_006252367.1


Basic Information

Item Value
RNA id XR_006252367.1
length 1259
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id LOC122356687
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 8336295 ~ 8338716 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttgttttttgtttttctttgttttaacaaaTCACATCGGCTCAAAAGCGACCACGaataaataaaaggcaaaaatagCCTTTTGTCAAGTGGTGTATGAAACACGGCTCGCGCGGAAGTCGCTTTCGAGCAGATTCCTGTTTCCATGATATTCCCGACCACGTGTGGAGAATGTTAATTGGCTGCACGAAGTAAACGACGTGACAGTGGGAAGAGCTAGGAAACAGCTAGGCGTCGGTCACAGTCCCCGCTTTATATTTTGAGTCAGTCAAATTAAAGCTAACTTCTTATGCTAACTAGCGGTTCTGACACTGAGCAATTTAAACTTGTGCTTTAAAGTGAACATTAAAAACCTCTGCTGACAACCACCTCCCTGGTGCTGAGTCAGGATTATTCTCCTTGTGGAGTAGGGGGTCACCATACTAGTTACAACTGGTTTTAGAAGCTTACCTTGACTGTAGGCCAAGCGCTCCATACTTTCACTATGTGTGATGCCCCACCGGTGGAGGCTCTGAGGGGAATACATCACTGCTGCTCCACGACCCCTTCCAGACTGAAGACGAACTTCTTGTCTCTCGaaaacgCGGGGAATTCTCAGGAggatattatttaaacaaatctgaTCATGTACCTAACATTACATGTATTCAggctttctttaaatataaaaaacgttattttatttagtgacATCCATGGAATTTTGTATTAAAACCCCTCTCCTTCTATGCCTATCTTTAACCAGAAGATGGCAGTGTCTTCCATAAAGAGAAACAAATCTTAAACCGTGTTCATTTGGTCTTTTATCAATTTTGATCTTGCAAAAACACTTCATTAGTAGTGGTGAAGTGGTCTTTCCACAATTAAAGTAGTGTTTTTCTAAGAttcgctttttctttttttaatttgaaaaaggAAAGGTCACAGACAGGCAACATTACCATCATTAAATAATCTCCATTACAATTTTACTTCTTCAATTACTTCGTCTACATTTTTCCGCctctaatttaaaatgaacatccACTTCAGGCTCGATTGAAGATCTTGCACATGCAATCCTCCTTGCAAAGCGTGAAGCTAGTATGTTGAGATGAGAGGGCACCTTTTAATTCATTGTCTTCAAGTGCTTTGCATTAAATTCATACAATTAGTAAAACCTTGGAGGTTTTGAATAGTTGCATGGCTTTCATGccaacaaaacaaatctaaacttatatgtaaataatgaaaaataataaaatattacctgAATGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135967 lncRNA upstream 19883 8313114 ~ 8316412 (+) True G91839
TU135964 lncRNA upstream 20839 8309278 ~ 8315456 (+) True G91836
TU135971 lncRNA upstream 27376 8305568 ~ 8308919 (+) True G91843
TU135970 lncRNA upstream 30915 8304948 ~ 8305380 (+) True G91842
TU135956 lncRNA upstream 53708 8282155 ~ 8282587 (+) True G91829
TU135992 lncRNA downstream 4408 8343124 ~ 8347157 (+) True G91855
TU136011 lncRNA downstream 47152 8385868 ~ 8386384 (+) True G91867
TU136002 lncRNA downstream 71252 8409968 ~ 8412679 (+) False G91863
TU136004 lncRNA downstream 71252 8409968 ~ 8413781 (+) True G91863
TU136134 lncRNA downstream 140727 8479443 ~ 8481992 (+) True G91944
XM_043255659.1 mRNA upstream 12088 8319498 ~ 8324207 (+) True hnrnph3
XM_043255660.1 mRNA upstream 12088 8319498 ~ 8324207 (+) False hnrnph3
XM_043255661.1 mRNA upstream 12088 8321121 ~ 8324207 (+) False hnrnph3
XM_043255654.1 mRNA upstream 35550 8291171 ~ 8300745 (+) True dna2
XM_043254623.1 mRNA upstream 80197 8238414 ~ 8256098 (+) True nfkb2
XM_043254681.1 mRNA downstream 24281 8362997 ~ 8368788 (+) True tacr2
XM_043254903.1 mRNA downstream 83231 8421947 ~ 8435924 (+) False pik3ap1
XM_043254901.1 mRNA downstream 83233 8421949 ~ 8435924 (+) True pik3ap1
XM_043254905.1 mRNA downstream 83233 8421949 ~ 8435924 (+) False pik3ap1
XM_043254904.1 mRNA downstream 83233 8421949 ~ 8435924 (+) False pik3ap1
TU135961 other upstream 25471 8306486 ~ 8310824 (+) True G91833
XR_006252298.1 other upstream 454812 7858698 ~ 7881483 (+) False zswim8
TU135767 other upstream 497354 7836190 ~ 7838941 (+) False chchd1
unassigned_transcript_1926 other upstream 1204799 7131426 ~ 7131496 (+) True trnag-gcc_68
TU134595 other upstream 3338399 4992327 ~ 4997896 (+) False si:ch73-49p17.1
XR_006252358.1 other downstream 327552 8666268 ~ 8683052 (+) False pcnx2
TU136262 other downstream 400357 8739073 ~ 8740089 (+) False sf3b5
TU136388 other downstream 822845 9161561 ~ 9164114 (+) True zgc:153981
TU136946 other downstream 1897200 10235916 ~ 10249725 (+) False LOC122356813
XR_006252428.1 other downstream 1990428 10329144 ~ 10329279 (+) True LOC122357143

Expression Profile