RNA id: TU136183


Basic Information

Item Value
RNA id TU136183
length 1816
lncRNA type inter_gene
GC content 0.48
exon number 3
gene id G91967
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 8465081 ~ 8468983 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGGTAATATGTTAAAAAGGTCATGAAAAAAGTAGAAgtctgagaataaaaaaaagtgaaatgacacacatttacactacacaaaagaaatgtataatatgCCAATCTGATCACAAACCACACAAAGTCGGCACACGGCAGTAATGGATAAAGTAAAGTCACTCGGTGATAGCAGACAGGAGAAAGAAAGGCTGGAGGAAGATGAGTGATCACAGACATTGTCATGCCCGGACATGAGTGTGGACAATCTGACACTCATGACACTCTCAATATAGCCACCTTCAGAGTGATCTTTACTGGCTTCTGAGCCCTCCACATCCATGAGGTCATCTGAGTTGCACCCCTCACAGGGAGAGCTGTCTCCATTACTGAGCCTCTCCAGCACCTCCAAAGAGGACAGGCGCTGGGGAATCAAAGGCTTCAGCTTGGCCGAGATGACATCTCCGGTCACAGGCTTCATGGCAGAGAGAGCGCAAGTCTTTTTGGCCTGTTGACTGTGTAGGGACCTGCGTAAAGAGAAAGGTGCTGGTCCCATCAGAAGCAAGTTCCTGGGAGGAGTGCATTTCTTCTCCTGCTGGGTGTTGGCTTGTTGGCGCTCGTGCCTGAGGATTGTGGTGAAACGTGTATAGGAAGCCGGGCAGGTGCCTTTACACTTGCTTTGTTTGGTGTGGAAGGGAAAGTGATCGTGGTGATGGTGACCTGTGTGTTCTGTGGGTGTCTCTTTGGCAGGATCATGACTGCAACTGTTTTTCTCTTCCGGTTCATTTAGATCCAAAGGCAAGTCAGTTCTTGTGGTGTTTGGGTACTGCTCGGATAAACAAGCTTCCTCTCTGGGGGTCTGGGCCTCTGTAATCCTGACTGGACAGTCCTCAGGCCCTGGCATGACAAGGGTCTCAGCTGACAGAGCAGACTGGAGGAAGCAGGTCGGTGCAGGGCTGTGGGGAGGACTTGGGTTACTAGGGAGTATGGGCATGGAGGCGGAGCGAGTGGGCGCAGAGTTCGAACGCTGAATAATACGCTCAAACTCCATCACCCGAAACGTGACAGCATCCCGGGGGACGATCTCAGTCCTCTCCAAGGTTGCCCTTGCAAGCTGAATTTAACCTGTGATCGGCATCTGGCGTATCTTCATCTCGTGGGCCACAAGCCTCGTGACGCAGATCCTCGCAGCTGTGAGCTTTGGGCCGCTGTTGTGTCGGCTCGATCCGTCTTTCCAGGCTTTCATCGATAGATGGCGATAGCTTGGGTTTAAACTTTGAGGGAAGTATTTGAGGGATGCAGGCTTTGGCAGCAGACAAGGACTTTTTAGTCTTATACTGAGAAGCTAGTGCATTAGTGGCAAGAACTGAGTGAGTATTTACAGAAGAGCAGGGTGAAATCATACAGCCATTCCCACCTTTATAATCTTTAGAAGAAGTGCTAGGGTGGCGCTTGTTAAGCGCTCTCAGGCCCTGCAGTGGGATGTCGCCGCCCTCCAGGACACTCTTGTAAATGTGCCGATCACATTCTGGAGCTGCCTGCCCACCGGCAGACAAGCTGTCCTTCTTCTCCACTTCACCGTTGCCTGCTTTACAGGCTGAGCTGGGTACAAATAGAGATACGAGAGATATGATCATCTTCACGTGACATGTCTCAATAGAACAGAATGCTGGTGCcacatttactttatattaaaaaaatgcttgttattaaaagcagatatataaaacagaaataggAAATAGGAAAACTGTTGAAAACATATACTAAAGACAGAATAATAAcctataaaatatcaaaaaagtattttgccATGGATTATGTTTGAACACTGCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136169 lncRNA downstream 29161 8435026 ~ 8435920 (-) True G91960
TU136081 lncRNA downstream 197008 8267766 ~ 8268073 (-) True G91916
TU136047 lncRNA downstream 242466 8168737 ~ 8222615 (-) True G91891
TU136044 lncRNA downstream 297149 8157258 ~ 8167932 (-) True G91889
TU135912 lncRNA downstream 333233 8131243 ~ 8131848 (-) True G91796
TU136184 lncRNA upstream 289 8469272 ~ 8471302 (-) True G91968
TU136224 lncRNA upstream 122375 8591358 ~ 8592574 (-) True G92004
TU136251 lncRNA upstream 198513 8667496 ~ 8678386 (-) True G92021
XR_006252359.1 lncRNA upstream 200252 8669235 ~ 8675536 (-) True LOC122356656
XR_006252360.1 lncRNA upstream 206604 8675587 ~ 8677257 (-) True LOC122356657
XM_043254906.1 mRNA downstream 43043 8416732 ~ 8422038 (-) True LOC122356335
XM_043256247.1 mRNA downstream 51269 8410008 ~ 8413812 (-) True srgn
XM_043255977.1 mRNA downstream 56436 8403168 ~ 8408645 (-) True vps26a
XM_043254679.1 mRNA downstream 62563 8396879 ~ 8402518 (-) True supv3l1
XM_043254677.1 mRNA downstream 68772 8387046 ~ 8396309 (-) True hkdc1
XM_043254914.1 mRNA upstream 11909 8480892 ~ 8501602 (-) True si:dkey-103j14.5
XM_043254915.1 mRNA upstream 11909 8480892 ~ 8493972 (-) False si:dkey-103j14.5
XM_043254913.1 mRNA upstream 11909 8480892 ~ 8493972 (-) False si:dkey-103j14.5
XM_043256396.1 mRNA upstream 116598 8585581 ~ 8640007 (-) True prim2
XM_043255498.1 mRNA upstream 178471 8647454 ~ 8663589 (-) False map3k21
TU135889 other downstream 417180 8043565 ~ 8047901 (-) True G91775
unassigned_transcript_1927 other downstream 1329939 7135072 ~ 7135142 (-) True trnag-gcc_69
unassigned_transcript_1925 other downstream 1333866 7131145 ~ 7131215 (-) True trnag-gcc_67
TU135441 other downstream 2074366 6358201 ~ 6390715 (-) False sdccag8
TU135397 other downstream 2239348 6225261 ~ 6225733 (-) False LOC122356805
TU136576 other upstream 646110 9115093 ~ 9115551 (-) True G92267
TU136940 other upstream 1716778 10185761 ~ 10190510 (-) False LOC122356841
TU137394 other upstream 2455961 10924944 ~ 10935331 (-) True G92819
XR_006252282.1 other upstream 2731963 11200946 ~ 11218985 (-) False rassf4a
XR_006252349.1 other upstream 3057197 11526180 ~ 11531309 (-) False zdhhc16a

Expression Profile