RNA id: XM_043255697.1


Basic Information

Item Value
RNA id XM_043255697.1
length 634
RNA type mRNA
GC content 0.46
exon number 2
gene id sf3b5
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 8739036 ~ 8740095 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGTCTGCTCCAATGTTTTCCACAGCGACGGGTTTCTGAGTAACTCCTTCCGCTCCGCGTCTCAGCCGGATTCTCCGCCCAGCCGCGAAGCTAACAACACTTATAAAAGACCACATCACTTACTTCCTTCATAGTTTACTCAGTTTTTACTTTAGaaACACAGTTGAAGATGACGGACCGTTATAACATCCACAGTCAGCTGGAGCATCTGCAGTCGAAGTACATCGGCACGGGTCACGCAGACACCAGCAAATGGGAATGGCTGGTTAACCAACACAGAGACTCATACTGCTCCTACATGGGCCATTTTGACCTTCTCAATTACTTTGCCGTCGCTGAGAACGAGAGCAAGGCTCGGGTCCGCTTTAACCTGATGGAGAAGATGCTGCAGCCGTGTGGTCCGCCAGCTGACAAACCTGAAGATGCTTAGGGTCTTTTTGACTGGATGTTTTATGTTCATTCAGTGCTGGGAGATCAAATGTAGAGACCCCGGACTCATGGGGGGTTGTGGGCGATCTTTGAATCCTCATGACTGGTTcacaaacaatgttttgttctttttttatgatattttgtatAGGTTGTTGAACTACAAGTGTGTTTGAAGAAAATAAAGTTGATATCCAATCACaaa

Function

GO: NA

KEGG:

id description
K12832 SF3B5, SF3B10; splicing factor 3B subunit 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136213 lncRNA upstream 146382 8591208 ~ 8592654 (+) True G91995
TU136208 lncRNA upstream 153033 8585357 ~ 8586003 (+) True G91991
TU136134 lncRNA upstream 257044 8479443 ~ 8481992 (+) True G91944
TU136004 lncRNA upstream 325255 8409968 ~ 8413781 (+) True G91863
TU136002 lncRNA upstream 326357 8409968 ~ 8412679 (+) False G91863
TU136265 lncRNA downstream 12372 8752467 ~ 8753884 (+) True G92034
TU136267 lncRNA downstream 14624 8754719 ~ 8757847 (+) True G92036
TU136276 lncRNA downstream 42913 8783008 ~ 8783630 (+) True G92042
TU136282 lncRNA downstream 46500 8786595 ~ 8786864 (+) True G92045
TU136283 lncRNA downstream 46893 8786988 ~ 8787849 (+) True G92046
XM_043254598.1 mRNA upstream 4078 8721028 ~ 8734958 (+) False oprm1
XM_043254597.1 mRNA upstream 4082 8721035 ~ 8734954 (+) True oprm1
XM_043255625.1 mRNA upstream 55984 8666267 ~ 8683052 (+) False pcnx2
XM_043255624.1 mRNA upstream 55984 8666268 ~ 8683052 (+) True pcnx2
XM_043255626.1 mRNA upstream 55984 8666724 ~ 8683052 (+) False pcnx2
XM_043256412.1 mRNA downstream 39060 8779155 ~ 8782768 (+) True agt
XM_043254821.1 mRNA downstream 51061 8791156 ~ 8807527 (+) True pgbd5
XM_043254958.1 mRNA downstream 152898 8892993 ~ 8900282 (+) True abcb10
XM_043254970.1 mRNA downstream 161455 8901550 ~ 8905011 (+) True acta1b
XM_043254971.1 mRNA downstream 165791 8905886 ~ 8909793 (+) True ccsapb
XR_006252358.1 other upstream 55984 8666268 ~ 8683052 (+) False pcnx2
TU135961 other upstream 428212 8306486 ~ 8310824 (+) True G91833
XR_006252298.1 other upstream 857553 7858698 ~ 7881483 (+) False zswim8
TU135767 other upstream 900095 7836190 ~ 7838941 (+) False chchd1
unassigned_transcript_1926 other upstream 1607540 7131426 ~ 7131496 (+) True trnag-gcc_68
TU136388 other downstream 421466 9161561 ~ 9164114 (+) True zgc:153981
TU136946 other downstream 1495821 10235916 ~ 10249725 (+) False LOC122356813
XR_006252428.1 other downstream 1589049 10329144 ~ 10329279 (+) True LOC122357143
XR_006252423.1 other downstream 1678727 10418822 ~ 10419594 (+) False ly6pge
TU137252 other downstream 2224778 10964873 ~ 10968914 (+) True eif4ebp2

Expression Profile