RNA id: TU136362


Basic Information

Item Value
RNA id TU136362
length 4203
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G92111
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 9140217 ~ 9144511 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTTTGATCTTCTCTCTGTCCTGCTCTGGTGTTCCTGTGCCAGTGATCCGCAGGCTCTTTTTAAACATCGCCATACGGGTCTTGGCTTCACTGCGCTGGATCTTGGGCAGCCGAGCTCTTTCCTGCGCCTGCCTGTTCTTCATCTCCTCTATCAGCCGCTGGTTATAACCCTGCATCTGCTCCATCTCCTGTGTCATGTCTTTTGAGGAGCTGATGTCTCTGCATGAAGTACTGGTCCTTCAGCTGCTGCTTAAGCAACTGGTGTTTCTCCTGCAGGTGGCGCTCCTCCAGCTCCCACATGGCTGCCTCCCGAGCTGTGTGTTTGAGAGCCAAAGAAGAGAGGAAATAGAATGATTCTTAGCCTTTAAAACCAGACCAAAAATTCATGTTTAGACATGTTTTGCAGACAGGAAATCATATAGTTCATTACACATCATAGACATCAAATCTTAACACAACATGTCTGGAATCATTTTCTCACACGTCTCATCGAATGAGATCTGGGCCGCACCTCAGGAGACACACGGCTGGCCTTTATAAGAACTTGAGAACTTTATAATTGGACCCCCGTCTGAAAATAACAATTAACGCTTTACTGTCTGTAGAAGCAGGTAACATGTTTGGCTTGTTTCCTTTGTGGTTGGAGATGAAAGTGTGACCTAGAAAAATCTATCGCATATGCGCAGCTAATTCATTTATAATGAACAAAACCACATTTAATACAGAAGGTCTACAGGACTTCCTCATAGCATCAAACATTGAAGTCTGAAGTGAAACTATTTGAAGGCTTGCTGCAGGCAAACAAAAACGTTACCACAAATGCTttccatttttatcattaatgtcagaacatttacagtgtttatAGAGGGCCTGACCTCTCATAAGCTGCTGCTTGTGGTTGAGACAGTCTCTCTCAATAGTGGCGATCTCTAGTTTGTGCTGCTGGATGATCTTCTTCAGAGCTCCATCCAGctcctgctgctgcttctgGAGAAACTCTTGCTCCTAAGAGAGATAGATGGGGAAGAAAAATagagaggaggaaaaggagGAGGAATCGGGTACAGAAACAACAGGgattataaattattaactgTACATGATCATGCTCCAAGGGGAagcagtcaaaaaaaaacaaaaaaaatcacatgagcAATACCACAGCACTGATAACACTGCATTAAGAGGAAAGTCACACACTTAAACCATTTAACGaggataaaacatttataattcatGATAAATGGATAAAGGTTTGTGAAAGGAAGGAACGAGAGAATAGATTAACACATATAAAGTCACAGTACAGCTTAACAACCTAAAGGTAGGTTATTTTCTTTGTTGATTGAGAGGGGGAATCATTAGGATGGATAAAAACATGGTTAAATGCGTATTACAACTTCACTAATTGCTGAAAGCTCATTGAAATGATCAATTTACTGAATGCAAAAAAGTTTGTACACTACCTTTGAAAAGATTTAGCTTAGTTATAAGTCTCCTACACTCACCAAAGCTACActtattcattcaaaaaaaactatgcaaacTGCACTTTTTGATTTGTATTAAAATcgagaaattatttttaaattgtattgggtttttttgggtttttttttaaacaaaacttgttcctgtaatggcaaagctacATTGTCAGCAAAATTTTTGATTGGTACTGAATGTGtttgtataattacatttataattttgtggCAGATTTCAGATACATGTGGGCCTGCCTAAAGGACATGTAGAACAACATTGAAATGagcaataatgttaatatatacaaTCATTTATAAGCTgctacaataatataaaataataaataaaattaataataataataataatgcatttcaaaagtCACCCTGATCTTCGACTCCTGCTTTAAACTTGGCCTTCAGTGGCACatagaaaaaaagcagcaatgGTGACGCACAGAAACTTGACTAGAATTTCAGTAACAGTATGAGACAGTGAGCGGATAGAAGATACACTGAGACACTGCAGCAACACAGGCGACAGCACTCCAAAACAACAGCACCTTCCTGCCCGCATGTGCCGTCCACATCACATTCAAAATCTACTGTGCTCTTACAAAAGGACGCGCTTCAAAAGAATCATCAAATCAATTCTGCTAGTGTCACTCTGCAAATATACACTGCAATTCAGGTGTGACAAAAGTGTACTGATTCCAGGGAGGCTCATGGGAACTTCTCTGTTCTGAGAGAGATCTGCTGACAACTTGCATTTTTGGATTGTATACCATTTTATGGCCTATTTTTGTGAGCTAAAACTATTCTCATTAATAAACTACAACACAGCTAAACAATTACAGCCGTTACACTGTGAACGTGCAATTTGTGTATGCATCTGCTCTGTATCTTGCGTGACGGACGGGCACATGTGAGAGGGTTGAGTCACGAGGAGAGTGGAGACTTACATCCTGCATCTGAGCGTTGAACAGAGCACATGAGGACAACTGAAAAGACTGTATCATAACCTGGGCCACACCCTGTGGAGCAAAACACAGCCAACTCCACCACGTCAGGAACAGGGGACACACACCAGCACTCAAGCGTATCGCACGCAAACCAGACACACATCTCACAATATCATCTAGTCTTCTCATTGCATTGCAGTAATCGGTTAGTTTCCTGTGTCGCGTGCAGTGAGTTCTTCGAGACGATTGACAGGGAGAGGGTTTAGCAGCTGGTGAGCCTGAAGGACCATTATCAGTTAGTGCAGCTGTTGTCCTCGACATGCGTGATGAGATGCAGCGGTCATCGTTAGACTCCTCGAGATCGATACCACATCCTACGTGGTCAATGTGTGTGGGTGCTCCCCCCTTTTTAAAGTGGTTTGGCTACTTTAGCTACACACGTTTTCAACAGGTGCCTAAAAATCAAGCTGCATGTTTCAGAGAAAAGCATAACAGGAACTCATGATAATGGTGTTTCACCATTTGCAGCAGATGCTGCATTACATAAATTCATCTCTGTATCTGCTATGAGTTTGGATAACAGACAGGAAGTCAGTGATGAGCCATTAGAAAAGTACAGGACAAAGTCTCCATTAATGCCCAcgattgatttttaaataagaaatttaACACCAGAGGGGCAAAAAACAGAAGTGAAAGTGTAGTAGCTGGTAATTAAATTACCTCTTCATGTTGAATGACTGCTAGGTCGTCCTTTAAGCGTTTCATGAGCTCTTTTCTCATGTGTTTAGGAGACATTCCGACCTCTTGTTTGACCTATAGTGTGAGCGTGCAGACTGTTGGGAATGAATGCTTTACTGGCATAGGGACTGATTGTGTAAGTCATTAGTCGAAGACTCTCATGCAAAATAATCCAGGAAGTGTTAATTTAGAACCTGATGAATGATTTAGTATTTGAGAGATAATCATCCTCGAACCACTGATGATTTCTGACTGGGTTAGCAGTTAATATAAAGAAGATTCCAATAACCCATCAGCTACTACCAGTAAGAGTTGTTCAGAAGCCGAAGAACAGTGAAAGCCCACTAACAGCAGCTAATATAGAGCCCTCTTGTACCTCCACAAACCATCAGAATATAGATTCCctcaaaagtattttataaaagatgcacacatatatatattgctgGCATTTATTCTTTGTGAAGAAAGTTTAACAGTATTGGCAGCAGgtcatttttttcagtagaTCAGCATGTCAAAATGTCATGTATCAGAAGGATATTTTGCTGGGGGGTCAAAACTGTTCAACTGACCCTAGATTGCCTTTGTTCTCAAAAATGCCAGTCAttgtttaattgaaaatattaacatttttagtgtTATAATGggaaaactgaattttcagcagtcatggTCACATGgtccctcagaaatcattctaatatcctGATTTGTTGTTCAAGCAGCATGAAATAATATCATCAATTTTAAAAAGAGCTGCCGCTGATGAacgtttttgtaaaaaatatacatttcaggaTTCTTGATGAGCAAAGTTCAAaagcagaatttatttgaaaaaacatgTCTTCACAatcacttttaaacaatttaatgcatccatccTGTTAATTATACTAACCTACTGATTACTTAACTAATTACTTAAACCTGCTGCTCAGCAATTGAAGTGTGCATCTTTTTTGACATCTACTGtcaattttaagtatttttaaaatgaaaggaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136358 lncRNA upstream 42312 9050367 ~ 9097905 (+) False G92108
TU136359 lncRNA upstream 42312 9095697 ~ 9097905 (+) True G92108
TU136365 lncRNA upstream 56070 9081688 ~ 9084147 (+) False spef1
TU136364 lncRNA upstream 56191 9081688 ~ 9084026 (+) False spef1
TU136353 lncRNA upstream 112308 9025972 ~ 9027909 (+) True fuom
TU136420 lncRNA downstream 119553 9264064 ~ 9275699 (+) True G92147
TU136465 lncRNA downstream 285667 9430178 ~ 9434596 (+) False atoh7
TU136467 lncRNA downstream 285667 9430178 ~ 9434596 (+) False atoh7
TU136646 lncRNA downstream 305935 9450446 ~ 9450689 (+) True G92313
TU136670 lncRNA downstream 334910 9479421 ~ 9479752 (+) True G92334
XM_043256250.1 mRNA upstream 2788 9120348 ~ 9137429 (+) True col17a1b
XM_043254652.1 mRNA upstream 24040 9103033 ~ 9116177 (+) True cfap43
XM_043254779.1 mRNA upstream 51096 9080848 ~ 9089121 (+) True spef1
XM_043256070.1 mRNA upstream 59473 9072842 ~ 9080744 (+) True adam8a
XM_043254728.1 mRNA upstream 71473 9066080 ~ 9068744 (+) True msx3
XM_043256254.1 mRNA downstream 15136 9159647 ~ 9160722 (+) True si:ch211-223p8.8
XM_043254502.1 mRNA downstream 17006 9161517 ~ 9163885 (+) False zgc:153981
XM_043254500.1 mRNA downstream 21867 9166378 ~ 9169605 (+) False dusp13a
XM_043254499.1 mRNA downstream 21970 9166481 ~ 9169540 (+) True dusp13a
XM_043254501.1 mRNA downstream 21970 9166481 ~ 9169540 (+) False dusp13a
TU136262 other upstream 400128 8739073 ~ 8740089 (+) False sf3b5
XR_006252358.1 other upstream 457165 8666268 ~ 8683052 (+) False pcnx2
TU135961 other upstream 829393 8306486 ~ 8310824 (+) True G91833
XR_006252298.1 other upstream 1258734 7858698 ~ 7881483 (+) False zswim8
TU135767 other upstream 1301276 7836190 ~ 7838941 (+) False chchd1
TU136388 other downstream 17050 9161561 ~ 9164114 (+) True zgc:153981
TU136946 other downstream 1091405 10235916 ~ 10249725 (+) False LOC122356813
XR_006252428.1 other downstream 1184633 10329144 ~ 10329279 (+) True LOC122357143
XR_006252423.1 other downstream 1274311 10418822 ~ 10419594 (+) False ly6pge
TU137252 other downstream 1820362 10964873 ~ 10968914 (+) True eif4ebp2

Expression Profile