RNA id: TU136365


Basic Information

Item Value
RNA id TU136365
length 282
lncRNA type sense_over
GC content 0.47
exon number 4
gene id spef1
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 9080848 ~ 9089121 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTTCATATACCCGAGGAGACGGTGAAGAATATTGCAGTCAGCACAGCAGGCTACATCGAACCAGTCCTTTGCTCTCTGAGAGAAAAGATAGAGGAGAAACGAGCGGGGAAACAATTAGATGGAACACAGgACTTAGAATATTACAGCACTACAACTGGACAGTCAAGACCAGATAAGCATCTGATGGTTTTTGGAGCCACTCATGCCACCAATCCAGCCACTGTGAAGAAGAAAGACAAAGTCAGTGCCGCTGCAGCCTTGAGACCAAATGTGGATCCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136353 lncRNA upstream 53779 9025972 ~ 9027909 (+) True fuom
TU136326 lncRNA upstream 116099 8929442 ~ 8965589 (+) True G92087
TU136303 lncRNA upstream 184779 8836716 ~ 8896909 (+) True G92066
TU136285 lncRNA upstream 290636 8789731 ~ 8791052 (+) True G92048
TU136284 lncRNA upstream 292487 8788997 ~ 8789201 (+) True G92047
TU136359 lncRNA downstream 11550 9095697 ~ 9097905 (+) True G92108
TU136362 lncRNA downstream 56070 9140217 ~ 9144511 (+) True G92111
TU136420 lncRNA downstream 179917 9264064 ~ 9275699 (+) True G92147
TU136465 lncRNA downstream 346031 9430178 ~ 9434596 (+) False atoh7
TU136467 lncRNA downstream 346031 9430178 ~ 9434596 (+) False atoh7
XM_043256070.1 mRNA upstream 944 9072842 ~ 9080744 (+) True adam8a
XM_043254728.1 mRNA upstream 12944 9066080 ~ 9068744 (+) True msx3
XM_043255823.1 mRNA upstream 53923 9025943 ~ 9027765 (+) False fuom
XM_043255820.1 mRNA upstream 58002 9021295 ~ 9023686 (+) True echs1
XM_043254580.1 mRNA upstream 60805 9014004 ~ 9020883 (+) False lgalslb
XM_043254652.1 mRNA downstream 18886 9103033 ~ 9116177 (+) True cfap43
XM_043256250.1 mRNA downstream 36201 9120348 ~ 9137429 (+) True col17a1b
XM_043256254.1 mRNA downstream 75500 9159647 ~ 9160722 (+) True si:ch211-223p8.8
XM_043254502.1 mRNA downstream 77370 9161517 ~ 9163885 (+) False zgc:153981
XM_043254500.1 mRNA downstream 82231 9166378 ~ 9169605 (+) False dusp13a
TU136262 other upstream 341599 8739073 ~ 8740089 (+) False sf3b5
XR_006252358.1 other upstream 398636 8666268 ~ 8683052 (+) False pcnx2
TU135961 other upstream 770864 8306486 ~ 8310824 (+) True G91833
XR_006252298.1 other upstream 1200205 7858698 ~ 7881483 (+) False zswim8
TU135767 other upstream 1242747 7836190 ~ 7838941 (+) False chchd1
TU136388 other downstream 77414 9161561 ~ 9164114 (+) True zgc:153981
TU136946 other downstream 1151769 10235916 ~ 10249725 (+) False LOC122356813
XR_006252428.1 other downstream 1244997 10329144 ~ 10329279 (+) True LOC122357143
XR_006252423.1 other downstream 1334675 10418822 ~ 10419594 (+) False ly6pge
TU137252 other downstream 1880726 10964873 ~ 10968914 (+) True eif4ebp2

Expression Profile