RNA id: XM_043254502.1


Basic Information

Item Value
RNA id XM_043254502.1
length 1711
RNA type mRNA
GC content 0.38
exon number 3
gene id zgc:153981
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 9161517 ~ 9164114 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCGTCGTCGGCGGGGCTCTGAGACTCTCGGTGGTGTCTGGTGACCAAACAGCGTCATAAAGAGCACCTGTTTGTGCGGATCACGGCGTGCCGAACCCGTTATGTATACTGGAGCCTCGGTAAAACAGAAGAAACACATCTCCACGGGCGTTATAGTCTGATCTGGGTCAATTCAGAAGAATGACAACCCAGAAAAATAAACACCCACTCCTAGCCATCAAGGAGTTCGAGAATATCCTGGACACATGCAAACTTGATCTAAATCCAATCGACGAGGTCTGGCCGAACTTGTACATCGGAAACGTggcCATTGCTCAAAATAGAAATGCTTTGAAGAAAATGGGCATCACTCATGTCTTAAATGCTGCTCATTCCAAGCAAGGCAGCATCGGGGACCAGAGTTATTACGGCAATACAATTGTGTATTATGGCATCCCAGCAGAAGACTCTTCATCATTCGATCTCAGTGCATACTTTAAACCAGCTTCTGATTTCATCCACAAAGCCTTGAGGAAGAAGAACGGAAAGGTGCTTATTCATTGCATCATGGGAATGAGTCGGTCTGCCACACTGGTTCTAGCGTACCTTATGCTGCGTCAGCGTCTGACTCTCCGCACCGCCATCCAAACAGTTGTACTGCGAAGAGCAATCTATCCTAACAGGAACTTTTTGAGCCTTCTCCTGGATTTAGACATTCAGCTACAGAGAAAGCGGAGGCTTTGTCCTAttctctgacaaaaaaaaaaacacaaaaatgcacgtttattcattttgtgtaATATAAGAGGTAAGGGGGTAACCACCATCGGTATGTTTACAGTATttatgatatgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatattgtttcatATAGTAAAACTTGTGCCTTGCAGGTTTAGCCTATGTATAGACCATCTTTGTACTTTTccatacatttacaaagttattaaataatagtttacctaaaaaactttaataatgaatgaaagtttttaatacaatttttttaaaacttcatttaCATTTGACATAGTCATATTAACATAGGTGGCTTTAGTGTACAATGTAGTGTACATGGAAATGAGAATGGTGTTTTTTAAGAAAGTCTGTATTATGTATTCAAGTTGCACTGAACGACAGCACACAAGTGCCACATGCTCCTCACACTGTGAATAATATTTAGCAGCGGAGTCAGTATTCAGCATAGAATACCAAATGAAACAGTATTAAATGATTGaattgtgcttttattattcagCTGCAGAGAAACCCCTCACTGTGAGCAGTACTAGCTTTTACATTGCTTTTGGCAGCCACGTTTGGAGAAATACACGGGCCAAGCACAACACTCTTCTGTTAACTCGATCCAAAAAGCCTTGTTTAAATGACTGAGCAGCACTCGCTGATGTGATTTTAGTgcacctttttgttttaatagcaGAATAATGCGTTTCATTCAGCTCACTGATTCACAGAAGTTCCTTTGTTATCTTGGAGAATATTTAGTGtagaaattaaattagattCTATTGACCATGAGCGGGACAAATATTGAATTTGTTACACTGTTAGATATAACTTCACTAGTGGACTCATGTTCAGATATTTAATACAAACAAGGTGCcaagtaaatgtattatatgtatttgttcaaatgaaataaacccGAAAGTCCTTTG

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0008138 protein tyrosine/serine/threonine phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136362 lncRNA upstream 17006 9140217 ~ 9144511 (+) True G92111
TU136358 lncRNA upstream 63612 9050367 ~ 9097905 (+) False G92108
TU136420 lncRNA downstream 100179 9264064 ~ 9275699 (+) True G92147
TU136465 lncRNA downstream 266293 9430178 ~ 9434596 (+) False atoh7
TU136467 lncRNA downstream 266293 9430178 ~ 9434596 (+) False atoh7
TU136646 lncRNA downstream 286561 9450446 ~ 9450689 (+) True G92313
TU136670 lncRNA downstream 315536 9479421 ~ 9479752 (+) True G92334
XM_043256254.1 mRNA upstream 795 9159647 ~ 9160722 (+) True si:ch211-223p8.8
XM_043256250.1 mRNA upstream 24088 9120348 ~ 9137429 (+) True col17a1b
XM_043254652.1 mRNA upstream 45340 9103033 ~ 9116177 (+) True cfap43
XM_043254779.1 mRNA upstream 72396 9080848 ~ 9089121 (+) True spef1
XM_043256070.1 mRNA upstream 80773 9072842 ~ 9080744 (+) True adam8a
XM_043254500.1 mRNA downstream 2493 9166378 ~ 9169605 (+) False dusp13a
XM_043254499.1 mRNA downstream 2596 9166481 ~ 9169540 (+) True dusp13a
XM_043254501.1 mRNA downstream 2596 9166481 ~ 9169540 (+) False dusp13a
XM_043255883.1 mRNA downstream 5394 9169279 ~ 9170253 (+) True LOC122356812
XM_043255023.1 mRNA downstream 174393 9338278 ~ 9342544 (+) True ap3m1
TU136262 other upstream 421428 8739073 ~ 8740089 (+) False sf3b5
XR_006252358.1 other upstream 478465 8666268 ~ 8683052 (+) False pcnx2
TU135961 other upstream 850693 8306486 ~ 8310824 (+) True G91833
XR_006252298.1 other upstream 1280034 7858698 ~ 7881483 (+) False zswim8
TU135767 other upstream 1322576 7836190 ~ 7838941 (+) False chchd1
TU136946 other downstream 1072031 10235916 ~ 10249725 (+) False LOC122356813
XR_006252428.1 other downstream 1165259 10329144 ~ 10329279 (+) True LOC122357143
XR_006252423.1 other downstream 1254937 10418822 ~ 10419594 (+) False ly6pge
TU137252 other downstream 1800988 10964873 ~ 10968914 (+) True eif4ebp2
TU137332 other downstream 2049641 11213526 ~ 11215087 (+) False G92772

Expression Profile