RNA id: XM_043254742.1



Basic Information


Item Value
RNA id XM_043254742.1
length 1313
RNA type mRNA
GC content 0.45
exon number 3
gene id atoh7
representative True

Chromosome Information


Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 9430178 ~ 9434605 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


aacaaagacTGCAGCGGAGCACGAATAAGAAGGACTGAGGTTatcatattttcacattttagCAGGACCATGGGAGGGCACGATGCTGGCAGCCAGCACCAGTTCACAGGGAttgccaaatattttaattcatacaCCATTACAGGAAGAAGGAATGTAATGGTCCTTGTCATCCACCCCTGGTTGATGCAGTGGCCCTGGCCAGATGGTAAGTTATCTATGTTTGTAACGCATGGTTTCAGTGATAGACCAGCCAAAGTTAATTGGAATGTCATTAAAGTTTGAGTTAATGGGGGTTGGGGCTGGGGAGCTAGTTCGAGTGCTCTAGTCCTGCTGTTGGATATGTgtgtttcattaataataatggatGTTTGGATGAAGCAATACGGGTGGGGCTCCACCTGCTGCCACCTGTTAATACTCTATATAAGCATCAGCCATCCCTATGGCAGAGCAGAAGCACTTCTATCTGGATTTACTTCACTACACGAACAAGAGGAACATTGAGTAAATTTTCCACCTCGTTTACGAGACCACCACCGGCCTTTGAGGACCTTTAGCCCCGGAGTCATGAAGCCCCGCAGCCCGAGCTGTGCAGATTCAGGGTCGGAGTCGGACTCCAGAGACCCAGAGAAGTTTGAGAGTGCCATGCGGCGGAGGATGGCGGCCAACGCTcgagagaggaagaggatgcAGGGCCTGAACACCGCATTCGACCGCCTCCGCAAAGTGGTTCCTCAGTGGGGTCAGGACAAGAAACTCTCCAAATATGAGACGCTGCAGATGGCCCTGAGCTACATTATGGCCCTCAACAGAATCCTAAATGATGCCAGCAGACACGCAGCTCCTCAGAAAGACTGGCTGGATCTACAGTTTGACGGCCTACAGCCAGAGACCTATTCTTGCTTTGTGCGCTATAACTCCCCTGTGGAAAATGACTGTATGCACTCCTCCTTCTCCTACCACTACGAAAGCCTTTAAGCTCTCACTGACTGATAAGCAATGGTGTGTTCACTTGTATCTTTCTGAACATAGATACGGCAATATGTTTGTAttactgtgtaatattttatgtttttggttcTGGAAATCAAATGATTAGCTTTATTAGGGTCTCACTCATTCTAGGAGTATAGTTGCTTTAATTGATGCAAAAAGGACGTTTTCTGGGCAActgtagaaaatatttaatcagaCATGTTCGAAGTCAGATGTTTGAGTTTTTCATTACTTTGTATCAAATCTTTTTGTATAGTGCGTTCAATCAAAGCtgcaaaagcattaaaaaaataaatattttgccaAAATAGCAA

Function


GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0045165 cell fate commitment biological_process
GO:0050769 positive regulation of neurogenesis biological_process
GO:0010842 retina layer formation biological_process
GO:0036269 swimming behavior biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09083 ATOH1_7; atonal protein 1/7

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU136420 lncRNA upstream 154504 9264064 ~ 9275699 (+) True G92147
TU136362 lncRNA upstream 285692 9140217 ~ 9144511 (+) True G92111
TU136359 lncRNA upstream 332298 9095697 ~ 9097905 (+) True G92108
TU136365 lncRNA upstream 346056 9081688 ~ 9084147 (+) False spef1
TU136364 lncRNA upstream 346177 9081688 ~ 9084026 (+) False spef1
TU136646 lncRNA downstream 15841 9450446 ~ 9450689 (+) True G92313
TU136670 lncRNA downstream 44816 9479421 ~ 9479752 (+) True G92334
TU136663 lncRNA downstream 136384 9570989 ~ 9583070 (+) True LOC122356835
XR_006252391.1 lncRNA downstream 147950 9582555 ~ 9583671 (+) False LOC122356835
XR_006252390.1 lncRNA downstream 148026 9582631 ~ 9583671 (+) False LOC122356835
XM_043256019.1 mRNA upstream 2066 9422476 ~ 9428137 (+) False si:dkey-51a16.9
XM_043256020.1 mRNA upstream 2066 9423763 ~ 9428137 (+) True si:dkey-51a16.9
XM_043256018.1 mRNA upstream 9728 9418159 ~ 9420475 (+) True LOC122356913
XM_043256239.1 mRNA upstream 13346 9414341 ~ 9416857 (+) True LOC122357057
XM_043256237.1 mRNA upstream 16007 9412350 ~ 9414196 (+) True calhm1
XM_043254627.1 mRNA downstream 2076 9436681 ~ 9443708 (+) True pkd2l1
XM_043254628.1 mRNA downstream 16575 9451180 ~ 9456908 (+) True bag3
XM_043255348.1 mRNA downstream 22952 9457557 ~ 9473534 (+) True inpp5f
XM_043255349.1 mRNA downstream 22952 9457557 ~ 9473534 (+) False inpp5f
XM_043255352.1 mRNA downstream 22954 9457559 ~ 9473534 (+) False inpp5f
TU136388 other upstream 266089 9161561 ~ 9164114 (+) True zgc:153981
TU136262 other upstream 690114 8739073 ~ 8740089 (+) False sf3b5
XR_006252358.1 other upstream 747151 8666268 ~ 8683052 (+) False pcnx2
TU135961 other upstream 1119379 8306486 ~ 8310824 (+) True G91833
XR_006252298.1 other upstream 1548720 7858698 ~ 7881483 (+) False zswim8
TU136946 other downstream 801311 10235916 ~ 10249725 (+) False LOC122356813
XR_006252428.1 other downstream 894539 10329144 ~ 10329279 (+) True LOC122357143
XR_006252423.1 other downstream 984217 10418822 ~ 10419594 (+) False ly6pge
TU137252 other downstream 1530268 10964873 ~ 10968914 (+) True eif4ebp2
TU137332 other downstream 1778921 11213526 ~ 11215087 (+) False G92772

Expression Profile