RNA id: TU136663


Basic Information

Item Value
RNA id TU136663
length 2692
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id LOC122356835
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 9570989 ~ 9583671 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGTTGTGCCACATCATCATTATCAGTCATGAAGGTTGCACTCTCTGCAATATCATTTcctgtatttatttctgtgagaTAGTTGTAGCACATATCTGTGTGTCAAGTACATTAGGGAGGGGTGCATCATACTTCCTGCTGGCTTCACTGGAGGCAGAAGTCGTCTGGACATCATCCACTGCAGTGTTAAAACTCTTAATGTTCTCAGATGAATACAGGCCAGAGGGGTTATTGTACATGTTGGTGACCACCCTTGGACTGCCAGAATTGAAAGGCATGGCGCTCCTGTTATGAGCAGAGCCTATATGTTTCACCtcctacagaaaaaaagagcaggTCCTTTAAGTGTATCTGTCTCATAAAACAGAAGAGAGTACTAGAAGCTTAAAAGgttatttcactcaaaaattatttcactctcatgtcattccgaacctgtatgactttctcctttttttctatgtataatgaaaacaaaacagcgGGCTCTAATATTGATGTGGACTCtactgactttcactgtattAAGACAATTTCTTCAGttcttcaaaaatgtcttcttttgtgaaATACAGTCAAAaagatttggaatgacacaaaAGCAATAGATAATTTCATAAGAATTTCAGTAATACATAACTATTCAGGCCGGAACAGTTATTTGAgaatcaatattttttctataaCTGTAGATATTACAACCAAGTTAATGTGAAAAAGGACTATTTaacaacaggaaaaaaactgaTGTGGAAAGGTTTTTTTCGACACTAATGACTAAGGTATTTATGACATTGTGAAACTTTCCTCTGTTAACAACATATACAGTTGTTTCTTATTATGTTTCTCTCCCTGCTTAAATTGGGAAACATTTCGAACACCCAAACTATGTAGTCAAGCTCCACACACTTCCTATGATCGTCCACATTCTGACCCTTACTTTCCAACATAGCCTGCAGGATGTGGGTCTTGCGTCATGGTTTTGGATGATAAACCTACTGGTCTCCATGGATAAGGCTTGTTAGGACATAAACAATGACTTCACTTTGGCAGCCTGTGGTGCCGTGCCTTTATTTGTTTAGCGGCTACGGTTCTGTTATGTATGGCAATCTCATGCACTACGAAGGCCTTTAAAGCTCACTGAAAGTGATCACGGGTCCATTTAAAAGTCCCTCAGCTTTCAAAAAAGCTGAGCTAAAACGCACCTGTGTTTCTTTATTGGCCAGATTCATCTTGTATGGATTGGTCTTTCCTTCTTCAGTGACCAGTGGGGACCACATTTTCGATTCTGatctacaaaaagaaaaaaacaaaaacaaaaaaaccccactttcAACAGTGTatcagtaaatgatgaaaaaaaaaaaataataataaaaaaatcattgtggCTTTACAATAACAAGCCTGGGCCCAGTGTGAAAGTTTCAGGCATGTTGATGCAATCGTGCAAATCGTGTATTGCATAAGTTTGCACggcataaaaacaacaaattctGCTGATTTAGACTTGTCACCAAGGTGACGTTATCTAGCCGACTGACACAGACAAGAATATGTTGAAATTGTGAGAATGGCTTGTGACAGACTTTAGTTGACAATTAAACCCAGCAACAATTTACATTGCATGTCGCAATAAATGAGTTATAGCTAATAACTAAAAACGTAGTGATGTTTTTTCCtttgaaatatcttttttttcctgacagtACTGACAGTAAAAACTGCAACTTGGggaaaaaatacactaaaatgtaaCATGATCTCAGTAAAAGTAATGCCACACTAATggttaataatattacatttacaatgcGTGGAAGAATTTAATGAAAGCctacatttgtgtttgtttttagaagATGTTTGATTACATTATGCATTTCTGGACACTCATACATACTCTCagctaaaaacacattcagaccAACCACTGCATGTAGTAAAGTAATTCCCCACCTGTCAATGGAAAGCACCATTTCCTCCACGCAAGCTTTGATTTTATTCTGTGCTTCCAGGTGAGTCATGCCGTCTGTTGACTCTCCGTCTATGGCCAGGATCATGTCCCCCATACAAAGGTCAGCTTGTGCCGCTTTGCTTCCTGGGGTCACCTGAAAAAGTCATATCTGGTCATTATCGTAACCTAAAAGGTTTTAGAAGAAAATTGTGTAGTTTTTCCATGCCTAATTATACACTTGGCAAAACTGTGAGAATAACTTCTCTTTGTTGTAGCTTTTACTTGTTAAATGATGACTTCCTCTATGAAGTGTTTCTGAGAAAAGCGTTTTGGTTAATGGTCTACTCAGcaggtttttatttacttttagctCGATCTTATTCATCCCAGTAGTAACATGGGTTTACGTCAACTAGAATGTGAAGTGTTTGTTTATGAACTGCATCCACTTCACGcaagctgtttattttttctggCCACTCTTGGATCCAATCCCAACTACAAGGTCGTTCGCATCAAAGATGGATATCTGGAGAGCGTGATGCCAGGAAGTAGGAGCGTCCATGAAGAGCCAGCAAGGAAAGATGGCTGGAGAGAGAGACGTCGGAGAATGTGAAGACAGTGAAGGACTGAATGAGAGACATGCAGCCTTTTTCtttacaagatgttaactgatggagtTATGTCGACTACTTGTGgatagtgatgtttttatccatCCACTGCAGAGGAGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136670 lncRNA upstream 91237 9479421 ~ 9479752 (+) True G92334
TU136646 lncRNA upstream 120300 9450446 ~ 9450689 (+) True G92313
TU136465 lncRNA upstream 136393 9430178 ~ 9434596 (+) False atoh7
TU136467 lncRNA upstream 136393 9430178 ~ 9434596 (+) False atoh7
TU136420 lncRNA upstream 295290 9264064 ~ 9275699 (+) True G92147
TU136704 lncRNA downstream 9349 9592419 ~ 9594277 (+) True G92361
TU136805 lncRNA downstream 141326 9724396 ~ 9727967 (+) True G92432
TU136807 lncRNA downstream 147655 9730725 ~ 9731002 (+) True G92434
XR_006252389.1 lncRNA downstream 461711 10044781 ~ 10049442 (+) True LOC122356803
TU136894 lncRNA downstream 485418 10068488 ~ 10070783 (+) True G92513
XM_043256233.1 mRNA upstream 2462 9567617 ~ 9568527 (+) True neurog3
XM_043254617.1 mRNA upstream 18494 9549733 ~ 9552495 (+) True pcbd1
XM_043255605.1 mRNA upstream 79583 9482211 ~ 9491406 (+) True LOC122356643
XM_043255348.1 mRNA upstream 97455 9457557 ~ 9473534 (+) True inpp5f
XM_043255010.1 mRNA downstream 31957 9615027 ~ 9667838 (+) True bcl11aa
XM_043255819.1 mRNA downstream 468017 10051087 ~ 10067172 (+) True fancl
XM_043255884.1 mRNA downstream 622043 10205113 ~ 10249725 (+) False LOC122356813
XM_043254689.1 mRNA downstream 711136 10294206 ~ 10297714 (+) True LOC122356189
XM_043255573.1 mRNA downstream 730344 10313414 ~ 10333604 (+) False ldb1a
TU136388 other upstream 406875 9161561 ~ 9164114 (+) True zgc:153981
TU136262 other upstream 830900 8739073 ~ 8740089 (+) False sf3b5
XR_006252358.1 other upstream 887937 8666268 ~ 8683052 (+) False pcnx2
TU135961 other upstream 1260165 8306486 ~ 8310824 (+) True G91833
XR_006252298.1 other upstream 1689506 7858698 ~ 7881483 (+) False zswim8
TU136946 other downstream 652846 10235916 ~ 10249725 (+) False LOC122356813
XR_006252428.1 other downstream 746074 10329144 ~ 10329279 (+) True LOC122357143
XR_006252423.1 other downstream 835752 10418822 ~ 10419594 (+) False ly6pge
TU137252 other downstream 1381803 10964873 ~ 10968914 (+) True eif4ebp2
TU137332 other downstream 1630456 11213526 ~ 11215087 (+) False G92772

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00012823 True 883 lncRNA 0.44 3 NC_007124.7 25769379 ~ 25773925 (-)
grasscarp (Ctenopharyngodon idella) TU87731 True 1736 lncRNA 0.38 2 CI01000012 11897330 ~ 11900381 (-)