RNA id: TU136894


Basic Information

Item Value
RNA id TU136894
length 412
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G92513
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 10068488 ~ 10070783 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ctgtttaTGTGTCTCTCGTTTTGTCTTGCTCCAAACTTTCTTTGGTGTTGACATGCCCAACTCTTCCTCATCATCTTCCTCTGCTTTCACCACCGGCTTTGatcttgctgtttttttctcagtaGTCTTGGGCTGGCTTGCAGCCTTGTGTGGTTGGCCTGGCTGTCTCCGACGGTCTCGGCCTAGAGAGGTCCAATGGGCCTTGTGGCCCGGACACTGACAGAACCTTCCTGAGGGCCTGGTAGTCTGGCTTTTCATTGTAGCCAAGGTTTTTCACAGTAGACAGGTACTTGGCAATCTCTACAAGTGGTCAGAAAGAAGGACATCTCAATGCACAAAACCTAAAGGTGTagttcaccccccaaaaaagaaCATTCTGTCACTATTTATCCTCATATCATTCTtgactttc

Function

GO:

id name namespace
GO:0007034 vacuolar transport biological_process
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252389.1 lncRNA upstream 19046 10044781 ~ 10049442 (+) True LOC122356803
TU136807 lncRNA upstream 337486 9730725 ~ 9731002 (+) True G92434
TU136805 lncRNA upstream 340521 9724396 ~ 9727967 (+) True G92432
TU136704 lncRNA upstream 474211 9592419 ~ 9594277 (+) True G92361
XR_006252391.1 lncRNA upstream 484817 9582555 ~ 9583671 (+) False LOC122356835
TU136909 lncRNA downstream 93776 10164559 ~ 10165656 (+) True G92524
TU136950 lncRNA downstream 165133 10235916 ~ 10249725 (+) True LOC122356813
TU136954 lncRNA downstream 177905 10248688 ~ 10249725 (+) False LOC122356813
TU136969 lncRNA downstream 204801 10275584 ~ 10276178 (+) True G92552
TU136995 lncRNA downstream 238454 10309237 ~ 10309776 (+) True G92563
XM_043255819.1 mRNA upstream 1316 10051087 ~ 10067172 (+) True fancl
XM_043255010.1 mRNA upstream 400650 9615027 ~ 9667838 (+) True bcl11aa
XM_043256233.1 mRNA upstream 499961 9567617 ~ 9568527 (+) True neurog3
XM_043254617.1 mRNA upstream 515993 9549733 ~ 9552495 (+) True pcbd1
XM_043255605.1 mRNA upstream 577082 9482211 ~ 9491406 (+) True LOC122356643
XM_043255884.1 mRNA downstream 134330 10205113 ~ 10249725 (+) False LOC122356813
XM_043254689.1 mRNA downstream 223423 10294206 ~ 10297714 (+) True LOC122356189
XM_043255573.1 mRNA downstream 242631 10313414 ~ 10333604 (+) False ldb1a
XM_043255583.1 mRNA downstream 242631 10313414 ~ 10333604 (+) False ldb1a
XM_043255580.1 mRNA downstream 242631 10313414 ~ 10333604 (+) False ldb1a
TU136388 other upstream 904374 9161561 ~ 9164114 (+) True zgc:153981
TU136262 other upstream 1328399 8739073 ~ 8740089 (+) False sf3b5
XR_006252358.1 other upstream 1385436 8666268 ~ 8683052 (+) False pcnx2
TU135961 other upstream 1757664 8306486 ~ 8310824 (+) True G91833
XR_006252298.1 other upstream 2187005 7858698 ~ 7881483 (+) False zswim8
TU136946 other downstream 165133 10235916 ~ 10249725 (+) False LOC122356813
XR_006252428.1 other downstream 258361 10329144 ~ 10329279 (+) True LOC122357143
XR_006252423.1 other downstream 348039 10418822 ~ 10419594 (+) False ly6pge
TU137252 other downstream 894090 10964873 ~ 10968914 (+) True eif4ebp2
TU137332 other downstream 1142743 11213526 ~ 11215087 (+) False G92772

Expression Profile