RNA id: TU136950


Basic Information

Item Value
RNA id TU136950
length 1705
lncRNA type sense_over
GC content 0.42
exon number 3
gene id LOC122356813
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 10205113 ~ 10249725 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCACTAAACATGCTCAGTAGGTAAGACGATGACTCAGGTGCATGTTTTACAAGGTGCAGTATTAAATGAAATCTAATCTGATCTGGAAGAACTTAATATTTGCTTCTTACCCTCAAGtatgtgttctttttttctcttttttttcttgtgcagaCCGAAGACATTGAGGAGATTGCGAAGAAGGCCCAAAGCTTACCCAAAGAGAACAAGAAAAGGCAGAGGATTGTTGTCTTCACCCAAGGCAAAGAAGGAACTGTAATGACCAAAGGTGCGTGGGTCAGTTTTCATCTCTTCGGAATTAGGTTTTTATAATCGCGCTTTTAGATCAGGACCGTCtcatgttaaaaagaaataacacaaCCCCCAGAAACACTTTTAGTTATTTACAGTTGGAATGATGTTGATAGATTTCCTCTGTAAACATTAGTGAATAGCCTCAAACAAGGTCATCTTAAGAATAGAATGCCGTTCTCTCTGGCGGCTTTCGATGTTGCTCAGTGTGAAATGAATTCGCCCTTGGCAATGACCTCCtatctctcagatgcagaattTGAATCCAAAGGGCTGTTGCAGTCACATTGCTATGGTAACTGAGTGGTAGGGGATCTTTCTGTGGAGTGGATAAGTTTAACCGAATAGTGGGGAAAGCATAACAGTTGTAGCTGATTAAACCAGCGGGGTTTGAAGTAGAAAGCAGGGAGGCGGCAGGAATGTAAAGGGGACAGGCTGAGCTGTTTAtgctcttcttctcctgctcttcaTTTCTTCTCCTTTTGCACCTGCCAGAATGGCATTCCTCGCTTTACAGTCGGCCAGTGCCCAGTCTCGGCTAAATTCCATTTGTTCAGGATAATTCGCCTTTTATTGCCTTTTGTATTTTGATTCATTGAATTTCACAGTGTTCTTACAATGAATTCTGTCGAGGTTGGACATTATTTAAATCTCTCGGGAACACAATGAGCAGGCTGCCCTTGCAACGCTCTGGAGACCCTGGAAAAACAATGAGGTGACAAGGTGGAGACATTCCCTGTCCTGAAGATCGACCAGAGCCAGATAGTGGACACCAACGGTGCAGGAGATGCCTTTGTTGGAGgtttcCTGTCTCAGCTGGTACAGGATAAGACCTTTGAGCAGTGCATCCGTGCTGGACACTACGCCGCTAACGTCATTATTCGCCACGCGGGCTGCACATTCCCAGAAAAGCCAGACTTCCACTGATGGGCCACTGAGAGACCGGAAGATACGGCCGTCCGAGTGTTTTATAGGActaatgccttttttttaattgactttttatcTTCTGTTCCTCTTTCCTCTCTTGTTCACTGCCTGCCTTCTGCTGTGCCTCTGTTTTGTCTGATTCACAGCCTAATGCGATCACAGAGACgtatttcacattaaaaactgtttacaaAAGAGGCAAAAGATGAATTTCTGTTGGAAATATTGAATCGTTTTTACTACTAGAGCCATTTTAGGATCGCAGTTTAGCGTGTTTGCTAACACAATAATTTTAGTTGTAATTAGCCGTAAAAACCGAAGCTGGTATTACAAACGTACAGAAGCCAGATTAAACTTCATTAAAATCAAAGGCCCATTTTGTGTCAAAGATATTTTGTTGGCCAGTCTTGCCGTTGTAAACCAAATGTATTTGTGGAAAACACTTATGTGTCACAAActgccaaaataaacaaaaaggctGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136909 lncRNA upstream 70260 10164559 ~ 10165656 (+) True G92524
TU136894 lncRNA upstream 165133 10068488 ~ 10070783 (+) True G92513
XR_006252389.1 lncRNA upstream 186474 10044781 ~ 10049442 (+) True LOC122356803
TU136807 lncRNA upstream 504914 9730725 ~ 9731002 (+) True G92434
TU136805 lncRNA upstream 507949 9724396 ~ 9727967 (+) True G92432
TU136969 lncRNA downstream 25859 10275584 ~ 10276178 (+) True G92552
TU136995 lncRNA downstream 59512 10309237 ~ 10309776 (+) True G92563
TU137060 lncRNA downstream 166720 10416445 ~ 10416695 (+) False ly6pge
TU137184 lncRNA downstream 392831 10642556 ~ 10645237 (+) True G92671
TU137194 lncRNA downstream 407783 10657508 ~ 10702103 (+) True G92675
XM_043255819.1 mRNA upstream 168744 10051087 ~ 10067172 (+) True fancl
XM_043255010.1 mRNA upstream 568078 9615027 ~ 9667838 (+) True bcl11aa
XM_043256233.1 mRNA upstream 667389 9567617 ~ 9568527 (+) True neurog3
XM_043254617.1 mRNA upstream 683421 9549733 ~ 9552495 (+) True pcbd1
XM_043255605.1 mRNA upstream 744510 9482211 ~ 9491406 (+) True LOC122356643
XM_043254689.1 mRNA downstream 44481 10294206 ~ 10297714 (+) True LOC122356189
XM_043255573.1 mRNA downstream 63689 10313414 ~ 10333604 (+) False ldb1a
XM_043255583.1 mRNA downstream 63689 10313414 ~ 10333604 (+) False ldb1a
XM_043255580.1 mRNA downstream 63689 10313414 ~ 10333604 (+) False ldb1a
XM_043255585.1 mRNA downstream 63689 10313414 ~ 10333604 (+) False ldb1a
TU136388 other upstream 1071802 9161561 ~ 9164114 (+) True zgc:153981
TU136262 other upstream 1495827 8739073 ~ 8740089 (+) False sf3b5
XR_006252358.1 other upstream 1552864 8666268 ~ 8683052 (+) False pcnx2
TU135961 other upstream 1925092 8306486 ~ 8310824 (+) True G91833
XR_006252298.1 other upstream 2354433 7858698 ~ 7881483 (+) False zswim8
XR_006252428.1 other downstream 79419 10329144 ~ 10329279 (+) True LOC122357143
XR_006252423.1 other downstream 169097 10418822 ~ 10419594 (+) False ly6pge
TU137252 other downstream 715148 10964873 ~ 10968914 (+) True eif4ebp2
TU137332 other downstream 963801 11213526 ~ 11215087 (+) False G92772
TU137330 other downstream 965767 11215492 ~ 11218175 (+) True G92772

Expression Profile