RNA id: XM_043255469.1


Basic Information

Item Value
RNA id XM_043255469.1
length 2972
RNA type mRNA
GC content 0.38
exon number 3
gene id eif4ebp2
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 10964855 ~ 10968914 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTCTTCGCTTCCTGCCTGGCGGAGGGAGGGGTCGGTGCTGACGGCTGGGAGGACGAGCTGAACGTTAAGAAAGCCTTGGGAAAGCGATAAGAAACGAGGGGAAAGGGCCCGAGGTTTTTACCTTCCATCGGGAGAACTTATCGCTCTGATTAGCACCCGAAGCAAGTGCAATGTCGTCCAGTCGTCAGCTTAGTGAGAGCAGGGCCATCCCGACCAGGACGGTGCTGATCAACGACTCAACGCAGCTACCTCACGACTATTGCACCACTCCTGGAGGCACTTTATTCTCCACCACCCCGGGAGGAACCCGAATAATCTATGATCGCAAGTTCCTGTTAGACCGGCGTAACTCACCCATCGCCCAGACCCCACCAGCACACCTGCCGGTTATCCCAGGAGTGACAAGCAAGAACGTCCTGAATGAAAACAAGAGGAATGAGGCTAACAACATCAACAACCATGATGCCAAGCCGGGGCAAGGTGAAGATGCTCAGTTTGAGATGGACATCTAAAGAAGAGGAACCAACGTGAAGAACGATTAATGACCTGGTACCTGTGTGCCAGTGGCTTGGCTTGTAGAAACCAATGTTGTGAGCCCTCTCCTTTAGCTCTCTCTAGCTGCTGGGTGCTGCATAATCATGGGGATAAATGACTAAAAGTTTGCCCAGTGGGGCTGCTGGAGCCCTGAAAGTTAACCTGGGAGCCCGTTGAGCTCTTTTTGTTTAGGTTTCAGGGCAGCCATCAGCTATACTTGCTTAAGTCACAGAGCAAGGGAAAAATTCTGTATTGTAAGTGCCCGGATATGTTACCAATTTTCCCGTAATAGACCCATAAACAAATCAGCCATCAGAGATTCACTGCTGATAGATCAGAGTACACTGTTCCAGTTGATACCCTTAATGCAGTCTGCTTGGTTCACATGTAAACTGATTTGCACTCAAGTCAGGAAATGCAGTCATCTGTATGTACATGTCCTCCCCAatgcaagatgttttttttcccccatcctAAACaattactgcattttattttctagttttattaaaaagggACAGCAGGATTATCAACataattttgatttttaaaaaaaataataaaaggattCCGTATTCATTCCAAGTCTTATATCAGTTAAAACAGGGTTTTTTTGTAGGttagtgttgttttgtttgttttttttcaggtataTAGTTGTCTCagatataaaatagttttataaaattgttcaaaaacaaACCACAGACCTTAATTCCTCAGttgaatttattttggattacgatgcaaaacaaattttatagttttatttaaaactaccCCAGAAGTTCAGTCCGTAGTCTTCTAATTTCCTTTCCTCTCCTCATTTTAATTGGTTAATTTTAAGTAATAACATCTGATTGCAATTTTTGAAAGACCGAACTGTTGCTTAAGGTCAGAAAGAATGTTTCCGTTCAGATTCGTCCTGCTAACAGTTGTCCTTCGCATGACGAGACACTTGAAATGTCAACATCAGCTATTAATTCACACCGTCTGGTTAAATGTAGACAATACCAAGTACTGTTGGACCGATCAAGGGTTTAATACACTTTATGAAACTATGACAAAAAGAGAGCTGGTCTCAGGAAGCACTTGCATTATTTACATAACAAGTACACGTCTTATGGCTCTGTTCATGGGAGAAACAGCACggtgaatatttaacattattatcagCCGTGACATCTACTGTCACTTTCCGATTACTACAATCCTCACAAACCTTGATAATCAAATCAAAGGTAGGAAAGCACTGAAGTgttgttttggtcattttacTTTTGTCTGTCTCACAGCCATACAACGGGAACGATCCTTTGAAAGATGGACCGTTTTCTAGTGACCAGACATTCATATTTTGATTCAGATCAAACATCTTGAAAACTTGAATTGAATCTTTCCAATGCTCTTCTATGCATGTTCTTTTGGTCTGCTTTTTAGTCTTTAGTTCacagatcatttaaatgttacgttttttagtttttttttgggatGCCAAATCTTGTGGAAGGTGGAAGGTAATATTGAAATAGAATTACGCAAAGAGATTATCCAAACAAAGTGACTTAAAGAGGATAAGACTTATTCTCATGACTTTAATTGTCTAGTTCTGTGCTCCGGTCGTTCTCTGAagcacagaatgtttttttttttttttttttttttttttttttttctttctctctcacagtgATCTCTTGTGCTTAGCCTCTGTATCCATGCCTTACTTTACTAAGCTGAGCAGCTGTGTCAAATACAGTTCCCTTTCATACCTTAAATACAGGATCAGTTCCTTTCTGTTTGATTTCTTTCCAAAGTTGAGAATAAGATTAAGATATTGCTATGTTTTACtagaaaacattatatttttggaaacatattattatttactttcttaCGGAGATGGAAAGATTTGCAGAAACAGCagtgtaatatttgtaatagcaatggaatggttaaaaaaaatcaaacacgGTTTAGTTTCGGCTTTGGTTGCAGTTAACTTTCTATAAAATATCCAATACTGGTGAATTCCATGACGGTTAGATGCCCATTTTCATTTATAGACTTAAGTCATATtcaagtaataatatttcacagtaaatgGAAGTTAAAATGCTGTCCTTCTGTGATAGATTTGTCAAATCCCAGCTTGAAGTATGGATATTTAGTAGCttcctttttttcaaaaaaaaaaaaaaaaaaaacgatcacTGCTTACTTTTTCTTCATACTTTCCCCAGGTCTCAGAAActttcagaaatgcatttagcTCTCTGTTCGATGGGATTTAGGTTGAAAGTTTTTAATCTAATGTGGCAGAAATTGgaaactgtattttctttcttctttgagACCCtgttcaatttaattttgacGAAATGCCAATGCCAGTGGACACTGTTACAGCAAGATCAATAAAAGTACCTTGATATCA

Function

GO:

id name namespace
GO:0045947 negative regulation of translational initiation biological_process
GO:0008190 eukaryotic initiation factor 4E binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137266 lncRNA upstream 3159 10959420 ~ 10961696 (+) True G92731
TU137260 lncRNA upstream 16936 10820942 ~ 10947919 (+) True G92729
XR_006252420.1 lncRNA upstream 201164 10753233 ~ 10763691 (+) True LOC122357062
TU137194 lncRNA upstream 262752 10657508 ~ 10702103 (+) True G92675
TU137184 lncRNA upstream 319618 10642556 ~ 10645237 (+) True G92671
TU137285 lncRNA downstream 14196 10982940 ~ 10983279 (+) True G92746
TU137287 lncRNA downstream 15494 10984238 ~ 10984645 (+) True G92748
XR_006252302.1 lncRNA downstream 36166 11004910 ~ 11022056 (+) True LOC122356274
TU137325 lncRNA downstream 233910 11202654 ~ 11203684 (+) True G92767
TU137340 lncRNA downstream 286887 11255631 ~ 11262620 (+) True cxcl12a
XM_043255466.1 mRNA upstream 13587 10924934 ~ 10951268 (+) False spock2
XM_043255465.1 mRNA upstream 13587 10924935 ~ 10951268 (+) True spock2
XM_043256345.1 mRNA upstream 45184 10915644 ~ 10919671 (+) True dnajb12a
XM_043255559.1 mRNA upstream 79345 10881919 ~ 10885510 (+) True cuedc2
XM_043255775.1 mRNA upstream 136495 10800072 ~ 10828360 (+) False pax2a
XM_043255461.1 mRNA downstream 599 10969343 ~ 10981784 (+) True pald1b
XM_043255463.1 mRNA downstream 602 10969346 ~ 10981784 (+) False pald1b
XM_043256013.1 mRNA downstream 17341 10986085 ~ 10989734 (+) True qrfpra
XM_043256223.1 mRNA downstream 21818 10990562 ~ 10993312 (+) True rps24
XM_043256224.1 mRNA downstream 21818 10990562 ~ 10993312 (+) False rps24
XR_006252423.1 other upstream 545261 10418822 ~ 10419594 (+) False ly6pge
XR_006252428.1 other upstream 635576 10329144 ~ 10329279 (+) True LOC122357143
TU136946 other upstream 715130 10235916 ~ 10249725 (+) False LOC122356813
TU136388 other upstream 1800741 9161561 ~ 9164114 (+) True zgc:153981
TU136262 other upstream 2224766 8739073 ~ 8740089 (+) False sf3b5
TU137332 other downstream 244782 11213526 ~ 11215087 (+) False G92772
TU137330 other downstream 246748 11215492 ~ 11218175 (+) True G92772
TU137640 other downstream 602916 11571660 ~ 11577859 (+) False lrrc9
TU137630 other downstream 634953 11603697 ~ 11604852 (+) True G92977
TU137635 other downstream 634953 11603697 ~ 11604224 (+) False G92977

Expression Profile