RNA id: TU137340


Basic Information

Item Value
RNA id TU137340
length 2370
lncRNA type sense_over
GC content 0.38
exon number 4
gene id cxcl12a
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 11255594 ~ 11262620 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCACAGTTGCTCCTGGATTCTACATTGCGCGGATCTCTTCTTCACACTGCAAACATGGATCTGAAAGTGATCGTAATATTCGCTCTGATGGCGGTCGTCATTCACGCACCCGTTTCAAATGCCAAGCCCATCAGCTTGGTAGAAAGATGCTGGTGCCGTTCCACAGTCAACACAGTCCCACAGAGAAGCATTCGCGAGCTCAAGTTCCTCCACACACCGAACTGCCCCTTCCAAGTCATTGCCAAACTGAAGAACAACAAGGAGGTGTGCATTAACCCAGAGACCAAATGGCTGCAACAGTACCTAAGGAACGCCATGAACAAAATGAAAAAAGCCCAACAACAGCAGAGCTAAGAAGTCTGCCAGATGACAAGAGAATCTGACAGCCCACCGTCACAGATATGTACCATATAGTCCTCTGGCATGCTTGCTGACCCAGCACTTAACCTGCCAAATATGCATCCCCAGTAAATGACTCGGCAAAAGACCACCAGACCATCGTCGCCACCCATGTAGTCTTCTCTGTTAGCGCCAAGTGCAATTATATATGtatgactgtgttttttttacgttatgatatgtatatacaatgttttttatatatatcgtcttaaaaacagtaaagagaTATTTTTGGAGTCGTGTTTGCTCCTTGTTTGTTGTGTTATGTTGGGTTAGGCAGAACGGCATTGAGATAATGAGGCGTTTTGGAGCAAACATTCAAAactctgaaatatattttaatcttaGATGTAACAGAATATCTGACTTCACAATGGCAGGACTGAAGTCCTGACAACTCATATGCATGCAAGTGCTTTGACACGAAAAGAAGGGCATTGATTTTGAACCATTTCGTTATGTATTTTACTAGTTCATAGCTTAGATATCTGTAACAGCATAAACTGCATGTAAACGTTATATGgcatatatgaaaaaaaaagagtcacttgtttttgttcttgGAAAGGCAGGGTTACTTAGCCAAACAAACACGAACAGTTTAGACCTTGTATAGCCCAAACAATTTCTGACTTTGGGGAATGTAATTGGTTTTACTGGAAGGCATCTGTGCGCCGACAGAGTGTCTTTTGCAACACTCTGTAGATACCAAAACATCTGTGCTTGCAAACGTTAATTGACCGATCAGAGTGTGCGTAAAGAGCTTGGCGTCACAACATACTAAATGTTTCTTCACGCTCAGCAGAATTATGTCACGAACAGAGTCTGTTGTGCGTctgtcaacaaaacaaaagtagagGTTAGAGAATTTACTGCAAGTACTAATGAGCTAATTCACTCATTCAGTGATGATAACTAAATCACGGTAGGCATGataatctttttaaaacagCTGTGTTAGTGGAACATCTGAGGTAGACCTTGAGGCAGAACTAATTGACGTAATGACTACCTATATATAACAATGCACTTTATAACCCCTTGTGACTTttgaggaaaacaaaacagattctGAATGATGCCCATTACGTAGTGAATAGTTCTAGTGCCTAATGTTTTCTCTGTTTAGATGTAGTTATGACTGTATTGccaaatttattaaacatttgtatCTTCAGcatcatattttataattttgagtgggtttattttatattttggtggaATATTTGACACCTGTTTTAAGAGCAGTCaagattattcatttaaacatcaACAGCAGCTAAATAACTGAcatgtacataaaaaatacatgtcaataaatacattaaaaactgtaCTAAAACAATTAAGAAATATCTGACTTCTGAAATATAGaggcacaaaaatatttaaccacATAAAAAATGTCTCATAATCTCCCcagtaaaacataaatcaacaATTTTCAGCATCTAAGCATGTCTCGTGTTTCTCTTGGACAACTGTTTTGTCTAAAAATGTGAACACCAAACATATAGCAAAGTATGCCAATGACTTGTACCTCTCCAAAGAATACTAGTGTATGGAATTTGTGCTATATCACTGCCAATTTCATAACGTTGAGCCGTTAAAAGAACCagaccacacaaacacaaccctCAGGCACAAAATCTATATGGAAACATAATGCCTCTACATACTCTGTGCCTCTACAGGAGTCTGTGTACAGGATGAGGTTTAGAACCCCCCACCAGTACAGTACATAAATATCATGCACTCTTTGAAAGGGCCATTTCAGAATGCGGTTAAAGCcatattactaattaatatttttcaaatggaAAAGTAAGGGtagctattatatatatatatctatattacaACAAATTGCCAATATTCTCAACACTGTAAGTAACTGCATATACTGTCCTTCCATGCCTTTTTCATCCCACTTAATGTGAAAATTACTTCTGTGTATATGGCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137325 lncRNA upstream 51947 11202654 ~ 11203684 (+) True G92767
XR_006252302.1 lncRNA upstream 233575 11004910 ~ 11022056 (+) True LOC122356274
TU137287 lncRNA upstream 270986 10984238 ~ 10984645 (+) True G92748
TU137285 lncRNA upstream 272352 10982940 ~ 10983279 (+) True G92746
TU137266 lncRNA upstream 293935 10959420 ~ 10961696 (+) True G92731
TU137527 lncRNA downstream 105646 11368266 ~ 11368907 (+) True G92907
TU137550 lncRNA downstream 128119 11390739 ~ 11390989 (+) False arhgap22
TU137548 lncRNA downstream 151603 11414223 ~ 11462116 (+) True G92923
TU137585 lncRNA downstream 246618 11509238 ~ 11509888 (+) True G92952
TU137594 lncRNA downstream 251857 11514477 ~ 11533930 (+) True G92958
XM_043254570.1 mRNA upstream 38203 11215240 ~ 11217428 (+) True cxcl18a.1
XM_043254569.1 mRNA upstream 40544 11213499 ~ 11215087 (+) True LOC122356105
XM_043255009.1 mRNA upstream 103184 11149996 ~ 11152447 (+) True ppifa
XM_043256084.1 mRNA upstream 109005 11033947 ~ 11146626 (+) True zmiz1a
XM_043256223.1 mRNA upstream 262319 10990562 ~ 10993312 (+) True rps24
XM_043255885.1 mRNA downstream 24430 11287050 ~ 11302394 (+) True ercc6
XM_043255996.1 mRNA downstream 41444 11304064 ~ 11309190 (+) True drgx
XM_043254642.1 mRNA downstream 66657 11329277 ~ 11337428 (+) False vstm4a
XM_043254641.1 mRNA downstream 66659 11329279 ~ 11337428 (+) True vstm4a
XM_043254844.1 mRNA downstream 89352 11351972 ~ 11355204 (+) True lrrc18a
TU137330 other upstream 37456 11215492 ~ 11218175 (+) True G92772
TU137332 other upstream 40544 11213526 ~ 11215087 (+) False G92772
TU137252 other upstream 286717 10964873 ~ 10968914 (+) True eif4ebp2
XR_006252423.1 other upstream 836037 10418822 ~ 10419594 (+) False ly6pge
XR_006252428.1 other upstream 926352 10329144 ~ 10329279 (+) True LOC122357143
TU137640 other downstream 309040 11571660 ~ 11577859 (+) False lrrc9
TU137630 other downstream 341077 11603697 ~ 11604852 (+) True G92977
TU137635 other downstream 341077 11603697 ~ 11604224 (+) False G92977
TU138047 other downstream 1309011 12571631 ~ 12575212 (+) True G93296
XR_006252318.1 other downstream 1324266 12586886 ~ 12588853 (+) False mgme1

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU55827 False 2176 lncRNA 0.38 2 NC_053115.1 24942816 ~ 24946744 (-)
striped catfish (Pangasianodon hypophthalmus) TU55827 True 3235 lncRNA 0.38 4 NC_047597.1 16124666 ~ 16134002 (+)
mexican tetra (Astyanax mexicanus) TU295009 False 3074 TUCP 0.39 4 NC_035921.1 18837362 ~ 18847028 (+)