RNA id: TU137407


Basic Information

Item Value
RNA id TU137407
length 2364
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G92829
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 10945204 ~ 10947731 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTAATTCttctttttatgtaattgtCTTTTATAGTTATGACAACATAAATTAAACCTTGAAGCTCtggaatatttatataatataataatgtatagcAATGGACAGATGTACAGTCATCTCaaaatttgcaaataaaaagacagaaaatcattatatttaaaaagaataaaataagtaattattaacatttttattgtgatttaccaataaatgcattatagtgTTAAATACAGTTTGCACTTTCCAGGTTagggtttttattatttttgaacatttattcaACATGGCCGGCAAAAGCAGTAAAGCACTATGCACCTCTGGAAGGTAATATCATCTTTTTCGGGAATGCACAGATGTGTAACTCTCTTAATATGTGTCATATAGGggagaaaaaggtttattttctAAGTTTAGCTATTACATTAGGAGATTTTTGTCTAATTTAATGATAAATGCACCTCAGAGAACTTGCGTTACACAATAACAATGAAACACTTTATATTTGTTCTAAGGCTTTGGGGGCTGTTTGCATTTTGGCTGCTTCTGATAGGCTGAAGCATCTGCAGCGCGTCCTTAGAGAGTCCTGAGAGCGCTGCAGCCAAACATGCAGCACTGCCCACAGCCATGAGCGCCGCTCTAATCCACACACCTGATTAGTGGCTAATCCCAGCCTTGTGCTTGTCATCTGTTAAATGAAACTCCTCTAGAGTCACTTCTGCCATAGCTGCCCTCTTTGTTTTTCAGAGTTTACATCTTACCCTCCTTCTGCCTTTCCTTTTACTGACCTTCTTTCTTCCATTCTTTCTTTTGCGAGttgtatatattctatataaccTCTTTCTTTGGTTCTCGCTTTGTTCCTCTCCTTCACATCTTAATTTGTTCTTCCAGCAAGTCTCAGCAGAGCGTTCATTCTTACCCGGTTTCTTCTTGGCTCCTTCTTGCACTTGGATTCGCTCTAGCTCAGCCAGGCAGGGAGGCTCTGTGGAAGAAAAACAATCAGTGCCTTTAGGGAAGAGTCGGCGCTAATCTCCTCCAGACAAACGCTTCACACGAGCTCCCCCACCAACTCCCAGATGAGGCGGCATTACACCAGGGCTGCTCTCCATGCAGCCGCACAATCAAATCACACTATCACACCCAAACACAGCCACGTTTTCAAAATGCCACAATAGACAGTTCTAATCTTTAGTTTTACGGCAATACGATTCATGAAAGAAAGAGTAAATTCAATTTTGAGTTATATAACTTGGTTTAAATAGGTTTCGAACAAAATTAACACCTGTTGTGGACTATTTCTCTAGTGCAATTTTCTCTTTAATGCCCTGAGGTGAAATGCGCAACCttcttataatgcattataagaaTATTcCAATATGCCCAATAAGTGAAaagaatatttcttttttgattgAGAGATTCTTTCACAGCAGATCACTCTGAACTactaatttttctttattaaccaTACATGAAAACATTATCTAACCTGACATTTTCTAACCTTCTTACACTatagtcttttaaaaacaaaatagtgaatactggaaaataaaattatttataattgttattataatatgaaactaaaactaCCAGTAAGTGGCAAGCCctgtaaatcataaatcatcaatttatttatttatttatttagctgcttattcattcaaaaaccaAGCAACTGATTATATGTACTGAATCAGAGAGCCCTATTTCCCCTATATCCCCATTTACTTCcattacaaagaaaaagaacagcCTGGACATTCTCCCAAAcatcttcttttattttccacGTAGGATAGTAACAGATTCGGGAATGACATGAAGgatagtaaatgatgacaaaacatttcctttaataaataaatcagtgcCGCACATACCAGCATATTGGCCAGCGCTTCAACACTATCACTGTGTGAGGGCTGGACAGGTCAAGTCAAAAAAAAGCAGCGAGTTTCTGTCTGACTGCCTGTCTGGTTTTAGTCCCAGAGAGTTTGAGGCTGAACAGGCTGTCAACAACCAACCCTGATGTTGTTTTTCCCTCTGCAATGGCCATTTCCTATCCACCGGGGGAAATACAAGGGGAAGACAAAGTGTGACAGGCCAAAAGCAACTGTGCCCTACCCAGGAGAAATGAGAGTGCCCAGCCACATATCGTGAGCAGAATCACATCAAACAAGAGGCAGGCTggtctagtgtgtgtgtgtgtgttaagataATGCTAAGATACAGCTTTGTGCCCCTCCAGTGCGATGCACAGTGGAGCATATGTCTGTTTGTGTCAAGAAACTTGCCATGCTCCATGGtttaagtaaacacacacacacactcataggAATTCTTCAAACAAAAGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252378.1 lncRNA downstream 145340 10787586 ~ 10799864 (-) False LOC122356733
XR_006252376.1 lncRNA downstream 145340 10787586 ~ 10799864 (-) False LOC122356733
XR_006252377.1 lncRNA downstream 149235 10787586 ~ 10795969 (-) True LOC122356733
XR_006252397.1 lncRNA downstream 157700 10784852 ~ 10787504 (-) True LOC122356898
TU137350 lncRNA downstream 160509 10784373 ~ 10784695 (-) True G92788
TU137414 lncRNA upstream 28802 10976533 ~ 10977459 (-) True G92836
TU137417 lncRNA upstream 38571 10986302 ~ 10986520 (-) True G92839
TU137418 lncRNA upstream 40683 10988414 ~ 10988695 (-) True G92840
TU137426 lncRNA upstream 41551 10989282 ~ 10991734 (-) False G92841
TU137420 lncRNA upstream 43660 10991391 ~ 10993798 (-) True G92841
XM_043254603.1 mRNA downstream 30448 10913050 ~ 10914756 (-) True trmt2b
XM_043255949.1 mRNA downstream 33375 10906055 ~ 10911829 (-) True scdb
XM_043255948.1 mRNA downstream 33377 10906055 ~ 10911827 (-) False scdb
XM_043255947.1 mRNA downstream 39290 10898368 ~ 10905914 (-) True wnt8b
XM_043255558.1 mRNA downstream 51252 10886804 ~ 10893952 (-) True hif1an
XM_043255464.1 mRNA upstream 3720 10951451 ~ 10955143 (-) True tysnd1
XM_043255468.1 mRNA upstream 7707 10955438 ~ 10958617 (-) True sar1ab
XM_043255467.1 mRNA upstream 11710 10959441 ~ 10964398 (-) True ppa1b
XM_043255007.1 mRNA upstream 205860 11153591 ~ 11185986 (-) True zcchc24
XM_043254566.1 mRNA upstream 238707 11186438 ~ 11192124 (-) False wu:fj13e08
TU137394 other downstream 9873 10924944 ~ 10935331 (-) True G92819
TU136940 other downstream 754694 10185761 ~ 10190510 (-) False LOC122356841
TU136576 other downstream 1829653 9115093 ~ 9115551 (-) True G92267
TU135889 other downstream 2897303 8043565 ~ 8047901 (-) True G91775
unassigned_transcript_1927 other downstream 3810062 7135072 ~ 7135142 (-) True trnag-gcc_69
XR_006252282.1 other upstream 253215 11200946 ~ 11218985 (-) False rassf4a
XR_006252349.1 other upstream 578449 11526180 ~ 11531309 (-) False zdhhc16a
XR_006252352.1 other upstream 823697 11771428 ~ 11799032 (-) False utp25
XR_006252291.1 other upstream 1481466 12429197 ~ 12430778 (-) False tmem234
TU138208 other upstream 1609346 12557077 ~ 12597302 (-) True LOC122356414

Expression Profile