RNA id: TU137414



Basic Information


Item Value
RNA id TU137414
length 816
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G92836
representative True

Chromosome Information


Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 10976533 ~ 10977459 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CCTGGAGCTGCTGTGGATGTTGAACACAGACTGGAATAGGCTGTTCCAGACAGCCTGGCTCTCTTGGGGTGAACATTTGTCCATTTGCCTCCAGCACAAGCTCCTCCTGCAGATTCAGCCAGAGAATTGTAGAGTGCCCTCGCCTCTGGTCTGTCAGGTAGGACATCACGACACCCAGAGTTTGGCTGGGCCATGCCATATAGAGGCATTTTGGAAACACGTCTGAAATTGGCTACTTTCATCTCCTTGGCTGTACTGAGCAGATCCGTTGCTAAAAACTCACTGGACACCTTTCAAAATTGAAGATATTAATGTGAACAACTGCGCATGCCTATGTTTTAGGGAGAATTGGCTGAGATACAGGACGAAGAGGTCACAGTTCGCCTCCGATAAGAACAGGGCCAGAAAATGAGATTCAGTCTATGCagttaatatttgattttagaAAGACTGGCATATCGAATGTACTCGAGCAAGAAAAGGACTATTCAAggacaaactataaaactataaCCTGGTGCAAACAATGATACTTTAGTATGACTATTTACTTGTTATCTGTTATAACATTTTCTCCACGTCATCACAGTAAATAGAGAATGCTCttctagagttaaacagttgagttttaccattttttttacctattCAGCCAATCTCCGGGTCTAGCGacagcacttttagctgcagctttgcATAGATTATTGAATCTGAATAGACCAGTAGCatctcactcaaaaatgaccaaagagtttcgatatttctCCTGTATAGAACTCAACTTTTCGGTAGTTACACTGTGTACTAAGTTGTGCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU137407 lncRNA downstream 28802 10945204 ~ 10947731 (-) True G92829
XR_006252378.1 lncRNA downstream 176669 10787586 ~ 10799864 (-) False LOC122356733
XR_006252376.1 lncRNA downstream 176669 10787586 ~ 10799864 (-) False LOC122356733
XR_006252377.1 lncRNA downstream 180564 10787586 ~ 10795969 (-) True LOC122356733
XR_006252397.1 lncRNA downstream 189029 10784852 ~ 10787504 (-) True LOC122356898
TU137417 lncRNA upstream 8843 10986302 ~ 10986520 (-) True G92839
TU137418 lncRNA upstream 10955 10988414 ~ 10988695 (-) True G92840
TU137426 lncRNA upstream 11823 10989282 ~ 10991734 (-) False G92841
TU137420 lncRNA upstream 13932 10991391 ~ 10993798 (-) True G92841
TU137439 lncRNA upstream 168719 11146178 ~ 11149252 (-) True G92848
XM_043255467.1 mRNA downstream 12135 10959441 ~ 10964398 (-) True ppa1b
XM_043255468.1 mRNA downstream 17916 10955438 ~ 10958617 (-) True sar1ab
XM_043255464.1 mRNA downstream 21390 10951451 ~ 10955143 (-) True tysnd1
XM_043254603.1 mRNA downstream 61777 10913050 ~ 10914756 (-) True trmt2b
XM_043255949.1 mRNA downstream 64704 10906055 ~ 10911829 (-) True scdb
XM_043255007.1 mRNA upstream 176132 11153591 ~ 11185986 (-) True zcchc24
XM_043254566.1 mRNA upstream 208979 11186438 ~ 11192124 (-) False wu:fj13e08
XM_043254565.1 mRNA upstream 208979 11186438 ~ 11192124 (-) True wu:fj13e08
XM_043255887.1 mRNA upstream 214846 11192305 ~ 11195431 (-) True LOC122356818
XM_043254564.1 mRNA upstream 217027 11194486 ~ 11199080 (-) True LOC122356100
TU137394 other downstream 41202 10924944 ~ 10935331 (-) True G92819
TU136940 other downstream 786023 10185761 ~ 10190510 (-) False LOC122356841
TU136576 other downstream 1860982 9115093 ~ 9115551 (-) True G92267
TU135889 other downstream 2928632 8043565 ~ 8047901 (-) True G91775
unassigned_transcript_1927 other downstream 3841391 7135072 ~ 7135142 (-) True trnag-gcc_69
XR_006252282.1 other upstream 223487 11200946 ~ 11218985 (-) False rassf4a
XR_006252349.1 other upstream 548721 11526180 ~ 11531309 (-) False zdhhc16a
XR_006252352.1 other upstream 793969 11771428 ~ 11799032 (-) False utp25
XR_006252291.1 other upstream 1451738 12429197 ~ 12430778 (-) False tmem234
TU138208 other upstream 1579618 12557077 ~ 12597302 (-) True LOC122356414

Expression Profile