RNA id: TU137606


Basic Information

Item Value
RNA id TU137606
length 3636
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G92965
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 11525357 ~ 11529080 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTTAACAAAACTGATGAAAGATGAAAGATGAAACAagaaatgctgttaaaaaaaaaaaacatttatttaacgtAATAAAATTCTAGGCAAGTTTCTTCAGATGTGGTCGACTTTGGAAATGAAGTTTGgatttcagtgcatttaaatagtgatataaataagtaaaaatcatatttacataatcaaAACTAAACCCTACATGGCTACAAACTCTGCTTtgaatgaatagttcacccaaaaatgaaaatactgcaatcttttactcaccctccacttgttccaaacctgtatgagtttctttattctgttGAACAGAAGATATCTTTTTAGTAACAGCTGACAGTAGCCACTGactttcataatatttttttttgtcagtggcAACTGTTAAATGTTTGGTTATCTATGTTGCtccaaatatctttttttgcattcaacagaataaagaaactcaCAAAGGTTTATAACAAGCGGAGAGTGAGCAAACGGTGACAGTTTTCTCATTtatgggtgagctatccctttaagcacaGTATCTTTCATAGATCGCACAGACAACTGTCATGATTTCATTACAAAATATCGATAGAAACATCCAAAATATGCATGGAAGTTTTGGAGGGCAGCCCTTTCATTTGGTCAGAAAGAGCAAAAGTCATCCGGTGAGATCACCGTCTAAATCCGGGCTCTGCAGACTCCTGTGTTCGCAGGGCTCTGGTTCTGCATTCAGCCTTGGGACAGTGAGCGAGACTCACATGTTGGTCACTGCCAACTAAGACAGTCAAGTCTTTAATGTCTCAGACTGGCATCATGTCTTTTTTAAGAGGATAAATGTCCCATGTCAGTCCGTCACCATATGGGGTGTGTCCAGAGGGCAGGAGAACGCGTGTCAGCCAATGACTTTCTTTTTTCTACACCGAAGAACACCTTCCAATTGTTTAGTATACCATAACTAAAAGGATTACGATAGacctttaaatagagagaacaggttaaaaaaaataattgcatagaAAATCCTTAAATCCACATTCCAATCATTTAAGACTTTTATACCTTACCTTTCCACGTTTTGCCAAACGTTTGGCCTCTTTGTTGTTTATATGGCGTTCAATGCTGGTTTCTCCACGGGTGATAAGTACAGCATGCCACAGTGTGAGAGCTCCTAGGGCGACTGACACTGTGCTggtgaaaaaaacagcaaacataACAAAAGACGTGAGTCTAGGGAAATAGTAAAACCAGTATTGAGGCCGCAGCAAAAGAATAGATTACCTTGTGAGGACCCACATGTAGATAACGCTCTTGTGAAACATCCTGTCTTTGTAGGTGTATGGAGGTTGTGAAATTTCCTGCCCATTGAAGCATTcgaaaagcaaaaaatatttaatattataaaaaatataatacattcgTAAAATATTGCAACATACTAAAagataatttttataaataaaaacatattttaaatatgatacgAATAATGACTTATATGAGTGCAACTatgttatttatacatatatactttaaaaaaatcttactaaccccaaatatttgatgtttttaagaactatgctcaccaatgctgcaattattttaattaacatagaataaaaacttttttattgccatttacAACAACTGatctatttcaatatattttaaactgaaatctaTTCCTGTGCAGCTGAGTTTTTAACAGCCGTTACTCAAGTCTCCAGCGTCACacgatccctcagaaatcattctaataagcgGATTCAGTGCCTAAGAAACATCTCCCGTTCAAATCATCAAGCTAAAAACTACCCATGTGCAATGTTTCTCATTCATTGCTCCAAATGGAAACGCACCAGATTCTACCAAGCAGAGCTTAAAAAGTCTAAAGTTCACCAGTAAATCCCCCTCATCCAATTGTGACAAAAGAAGAGTCGGTAAGTAATACTCATCTAAATACGCACGGTTAGCATTGGGATAGAGAAGTTCTGAAATGAGTTTTCATAGCATGCTGTTCGTTTAAGAATGTTAATCAATGAACCAtgttacagaaaacaaaaagtacaGCTCTAAAGTCTAATCAGCAAGCAGAAAACACGACTTGGGCCACCTGTACTCCCTTCCCGGCCATGCCTTCTGACGGGACAATGCCGATGAGAAGCGCAATCCCGGTCACCGGGACACCCTGTTTCTCCGCTTCCAAGTGTCTGAATTGCTATGGAATGGCAGAGAGACAGCTGGCAGTTAAGACATGCCCGCTACACCAGACTTtgagaacagaaagagaaaaggagagacaCAACCATTCAGGAAGAGAGGAGTTAAACGCTATCTACCTTATTCATTAGAATAAGTAAAGGAAAAAGCAATGCCCATCTTTcaagcattaaaatgttatactaCATGGAAAAGTGCAAAGATAGCAAAGCCTCAAAAAACAAAGCCTTACATCTATGGCATTGTACGCATCAATAAACAGATTGCGACCGCTGATGCTGCAATACATGCAGCCCAAAGTCAAAAAGAGACAAAAGGAGAAGAAGTAACGATGATTGTAATGGCCAACACAGTTGTTAAGCCAAgctgaatataaataattaaggaCTTAACTACACGGAAGCGagaacaaaatgaaatgcatctggactgttaaaggaataattcaccaaATTATTCTAAACCCTTGTTACTTTTATTCCCCTGTGGAATGCAACAGGAAATCTGAAGAGCAGCAATGACAAGACTTTTGGCTGCTTTTTAAGTATTTGTCCCATTGGGATTTTTCATAATGTCTTTGTCAAAAAGTTGTAAGCTATGAACAAAGCCAACTAGCTATAAGGCAATAATATTAGAAATAGGTACTTAAGGGAATAGTTctgttaaacataaaagaagatatttagaaaaatatggtTAACTAAACAGATTCTGTCCCCATTGACTTCTGGAGTAGTTTTTCCCtattcttttatgttcaacagaagaGAGAAATTTTGTGGCAAACTATACTGTTAATAAAGGAAAGATCTAGAGTaacataaatagttttaaatgacaataataacaaaaagcaatgtataattataaaaatactgatttaaagaTGATGAATATGTatacagaaatgtttattgccaaatgaatatatatacgAATATATATGTCAACGGGAAGTGTTTTCAGGTTCTCTAAATAATAGTTAGTTTGTTGTATTTTCAGAATAATAGGTAATGTATTTTTTCCGATTTTTTGTTTCGGAaacatgattattaaaaaaaagttcaaataacgTGAGCTGGTGGCTTCTGCAAAAATGAACAACCTCGTAGCTCACAGAGTACGTTTGTCTTTaaagctttcattttttattaagttatgaAACTGTTAAAAACACTGTTGAACCCTATTCTGAAAACTGTTCTTTGCAATtacaatgaataaatgcattacaactTGTGTATAGTTTGCAACAACGTGAATGTGAAgatatgacagaatttacattttttggaccaactattcctttaaatcgaACGTTTAACTAAAACATAgccaatatatatttaaattttacagtaaaataagaCCAAATGGGAGCACTTTGGTGATTTAAAAAGGATACGGCAATGATGATCCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137599 lncRNA upstream 6014 11518620 ~ 11519343 (+) True G92962
TU137585 lncRNA upstream 15469 11509238 ~ 11509888 (+) True G92952
TU137548 lncRNA upstream 63241 11414223 ~ 11462116 (+) True G92923
TU137550 lncRNA upstream 134368 11390739 ~ 11390989 (+) False arhgap22
TU137527 lncRNA upstream 156450 11368266 ~ 11368907 (+) True G92907
TU137616 lncRNA downstream 13973 11543053 ~ 11558240 (+) True G92968
TU137626 lncRNA downstream 36950 11566030 ~ 11618812 (+) True G92974
TU137632 lncRNA downstream 74617 11603697 ~ 11604159 (+) False G92977
TU137645 lncRNA downstream 99279 11628359 ~ 11628566 (+) True G92984
TU137667 lncRNA downstream 198743 11727823 ~ 11728484 (+) True G93001
XM_043255618.1 mRNA upstream 17418 11486772 ~ 11507939 (+) True antxr1d
XM_043254670.1 mRNA upstream 44361 11477208 ~ 11480996 (+) True gdf10a
XM_043254615.1 mRNA upstream 70646 11444433 ~ 11454711 (+) False ptpn20
XM_043254616.1 mRNA upstream 70646 11447557 ~ 11454711 (+) False ptpn20
XM_043254614.1 mRNA upstream 77494 11428384 ~ 11447863 (+) False ptpn20
XM_043255343.1 mRNA downstream 2775 11531855 ~ 11533395 (+) True mettl18
XM_043254710.1 mRNA downstream 12042 11541122 ~ 11557216 (+) True tdrd9
XM_043254711.1 mRNA downstream 12042 11541122 ~ 11556025 (+) False tdrd9
XM_043254959.1 mRNA downstream 48582 11577662 ~ 11592600 (+) True lrrc9
XM_043254805.1 mRNA downstream 65085 11594165 ~ 11602678 (+) False pcnx4
TU137330 other upstream 307182 11215492 ~ 11218175 (+) True G92772
TU137332 other upstream 310270 11213526 ~ 11215087 (+) False G92772
TU137252 other upstream 556443 10964873 ~ 10968914 (+) True eif4ebp2
XR_006252423.1 other upstream 1105763 10418822 ~ 10419594 (+) False ly6pge
XR_006252428.1 other upstream 1196078 10329144 ~ 10329279 (+) True LOC122357143
TU137640 other downstream 42580 11571660 ~ 11577859 (+) False lrrc9
TU137630 other downstream 74617 11603697 ~ 11604852 (+) True G92977
TU137635 other downstream 74617 11603697 ~ 11604224 (+) False G92977
TU138047 other downstream 1042551 12571631 ~ 12575212 (+) True G93296
XR_006252318.1 other downstream 1057806 12586886 ~ 12588853 (+) False mgme1

Expression Profile