RNA id: TU137667


Basic Information

Item Value
RNA id TU137667
length 662
lncRNA type inter_gene
GC content 0.28
exon number 1
gene id G93001
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 11727823 ~ 11728484 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTGTAATTTATGTAACTTAACTcgtaaaattataattttttggggtaacactttagaatactgtttCTTACTGCATAATTAATAAGGAATTATTGAAGAACTAAAAGGTTATTCTTCATTAACACTTACTACTGTTAACTGCCAATGAATATGTGTTAACTAGTCTGTATGTACTACAATTATATGACTGTGTGAAGTAACAGGTAATCAATAACTAATGTATTTGTCTCCTGAagaattaatgttaattatctACTAGCTAAGGTTCAAGAAAAATCAGTATGAAAtaagtatttgtaattttactcAAGTACTTGATTTGTGGGCCTCAATCTGATTATTAAAGTGACTATTTGTGTATAACTGTTCAGTAGTAGTTATTTCATAGTTATTTTTCTTGAACCTTATCTTGTAGATAATATTAGTTCTTCAGGAGGTATTATTGATTAGCTAACTGTTACGTAACACAGTcataaaattgtattacataCTGATTAGATAATACAACTAGTTAACAGCAGTGAGTTAAGtggtaattaataatttagttcttcaacaatttcttattaGTTATGCAGTGAGTAAGaaacagtattctaaagtgttacctttttgTACATTGCTACATGCAGTAACAGCCAAAGAACTGATTGTTATCACT

Function

GO:

id name namespace
GO:0042116 macrophage activation biological_process
GO:0002274 myeloid leukocyte activation biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137645 lncRNA upstream 99257 11628359 ~ 11628566 (+) True G92984
TU137626 lncRNA upstream 109011 11566030 ~ 11618812 (+) True G92974
TU137632 lncRNA upstream 123664 11603697 ~ 11604159 (+) False G92977
TU137616 lncRNA upstream 169583 11543053 ~ 11558240 (+) True G92968
TU137594 lncRNA upstream 193893 11514477 ~ 11533930 (+) True G92958
TU137672 lncRNA downstream 23455 11751939 ~ 11758609 (+) True G93006
TU137801 lncRNA downstream 78544 11807028 ~ 11807246 (+) True G93113
TU137844 lncRNA downstream 349153 12077637 ~ 12079902 (+) True G93153
TU137864 lncRNA downstream 370210 12098694 ~ 12099226 (+) True G93166
TU137865 lncRNA downstream 371122 12099606 ~ 12100355 (+) True G93167
XM_043256273.1 mRNA upstream 3463 11712438 ~ 11724360 (+) False hif1aa
XM_043256274.1 mRNA upstream 3463 11713580 ~ 11724360 (+) True hif1aa
XM_043256083.1 mRNA upstream 19115 11693923 ~ 11708708 (+) True prkcha
XM_043254882.1 mRNA upstream 37582 11681351 ~ 11690241 (+) True slc38a6
XM_043254884.1 mRNA upstream 49211 11661587 ~ 11678612 (+) True mnat1
XM_043254599.1 mRNA downstream 147320 11875804 ~ 11881877 (+) True osr1
XM_043256201.1 mRNA downstream 294076 12022560 ~ 12024291 (+) True LOC122357024
XM_043256198.1 mRNA downstream 295918 12024402 ~ 12029159 (+) True LOC122357022
XM_043256199.1 mRNA downstream 300967 12029451 ~ 12031896 (+) True rdh14a
XM_043255552.1 mRNA downstream 373489 12101973 ~ 12104666 (+) True mtres1
TU137630 other upstream 122971 11603697 ~ 11604852 (+) True G92977
TU137635 other upstream 123599 11603697 ~ 11604224 (+) False G92977
TU137640 other upstream 149964 11571660 ~ 11577859 (+) False lrrc9
TU137330 other upstream 509648 11215492 ~ 11218175 (+) True G92772
TU137332 other upstream 512736 11213526 ~ 11215087 (+) False G92772
TU138047 other downstream 843147 12571631 ~ 12575212 (+) True G93296
XR_006252318.1 other downstream 858402 12586886 ~ 12588853 (+) False mgme1
XR_006252431.1 other downstream 1488174 13216658 ~ 13216757 (+) True LOC122357146
TU138522 other downstream 2011123 13739607 ~ 13909603 (+) True G93613
XR_006252357.1 other downstream 2625632 14354116 ~ 14367135 (+) False frmd6

Expression Profile