RNA id: TU137672


Basic Information

Item Value
RNA id TU137672
length 5496
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G93006
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 11751939 ~ 11758609 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTTTTTAATGTGTAAGACTTAATTTACAAATCATATTACAGCGGTTGTACAGAAGTATGAACACACAAGGTGACACAACATCGCTGCAACATttcaaaaaacatcataaaaacgTTCTCCAGAGAAAAAGTAAGGCACCGACTGAATCGGTGGGTATATAGGcaattcatttaaagcattttgagAATAAACTGAAACGGCTAAATTAAAAGAATTGCAAATATAAACATGTACACAATGTTCAGaacatgtataaaatgtttaaaaccgGTTTAGTTGGAACACACCTTGTGAAAGTTGAAGGTGTCAGTGGCATGTTAGACCTGAATCGCGTTGGGTCGCAGAGAGAGCACGGGTAGAGCGTGTGCTCTTGTGCAATAAATCCTAAAACCTCTTTATGCTGGTGTTTACTGGTTCTGTGAAGCGAACAGAACCCCTGTCACTGAGTTCAGAATAAGATGGATTCTAAATGACCGTCACGGGTCTGTTGTCTAAATGCTTACTACATCTCACGTACAGACTACTGCAGAGCTAAGGAAAAATCCTATGGGAGAGGAGATGTGACATCTGTGAGCTTTTATCAGGCACTGGAAAGACTCATTCACTCACATTAAACATAAGAGGAAAGGCTGTTTCATCTGTCAAGCTGTAAAGAAACGACTCTCCTTAAAACACCTCAGTCAGATCAGCAGAGTTTCAGAGTGCTAAAACTAGAGTTATAACATTTTCTAGTTcctaataaaatcattttaaaaatcttgtcATTATTCACTCACGTTGTTCAGATGACACattaaaagtgttgttttgtaatttacagAATAATTTGGTGGTGGTGATTTATAAAGACCAACCTAAAAACACCcgccttcaaaaaaaaaatattaaacaaaattaaataaaaaaaaataaatacaccttAAACATCACGAAAGGAGTCGATTTCTTTCATATGTGCTATAGTCAGTCTTCTAAAGAAGtatattttttgcaaaagattGGAGCAACtatgcttttaaagaaaataatgcttttatttagcaaggatgcattacattgttaccagaaatgcatattacagtatatttgtaTACGAttatttgacactgaagactaatgtgtctgctgaaaatccagcttttccatcttagaaatacatttaaaaatattaaaaatgaagtttttcctattttaaatggcaaaaaatatttcagaattaaattttttcactGCATTCCTTTTGTTTGATCGAATACTTATACTGAGCATTCATGAGCATGAAAGACTTCtgctcaaaacatttcaatagtGTTTGACAGGTTTGCGTGTGGAACGGACCATGATTAAAGCCCGTCTTCCCCCTCTGTCAGAACCCCTTGCATGTAATTTGtgcttatatttattgtaaacaaaTAGCACTTTTAAGGAACGCGTTTTACGGACACGGTGAGCTCTGGTTATCAGTGAGCAGCGAATTTTGGTCTGTTCCACACAAACTATCACATAGTTTCATAAGATCTAGAAGTCTCGGAGCATGGGAGTATGGGAGTACGAATCGTGTGGAAAAGCGCAGCTTGGGCATTCTGcctaataaatcattttacgtTTCATGAAATAATACAGAATCTATACAAGAGTGAACTGAATGGCATATCTAAgctgaactatgcctttaaagaCAGACTGATCAGAAGCTCCTGGGAGGGTTGAGTCTGAGGGACTGCGGGCTGGCAGAGCCATGTAACCAACCTATTTAACTGATTTACTGTAGCTGCAATGAGATTCTCATTTATAGCGGGGAAAATAATTTGGAAGCCATATCTGCATGAGGCAACAGTGCGCCAAGCCCCTAATAAAACTGTCACGAGTGAGACATAACAGCCTCTCTGTGTCAGTTTGTGACACAGCTGTTTTCTAGTCACAACGCATTAACATCCTACGTTTCAACATTGCGCTGCATTATGTCATTGTAATTTTGACAGCCGTGGCATTTTCTCAGGCTTAAAAGTCGAGAGAagggtaaaataaaattttgagacTGTTAAGAAGAAACTGAGAACATCTCCCAGGCCCAGCGCGAGAGAGAGGGAAAGCTCAGCCCAGCTGTGCGTCTTGCGGGACGTGGTCTTTGAGGGAGACACTGTCCGGTTGGGACTCTCTGAGGACCATCACAGTCTGAGACTCTTTCACAAGATGTGTTTCACGACTCCATGTGCCCTAAGAATGTGCTTAATTCTGGTCTTACAAAACATACCAGCTCAAAGagtgctttctctctttttaaggAGGGGAGAAAAACAGACTCATATACAGTATCATCACCTGAAACGACAACATTAGCGAAGCTAAGAATACATATAACAGCATGTAACATCACACTGAACAAACACTCCCCTTTTCTCTCACACTCATACTTTTTTCTATCAACCTGCAAGACTGCAACAGTGACGAGAAGgtgaagaagttttttttttttttttttcatattttgaaacagCACACTGAATGAGTGACACATTCACTAAtaaactgttcttttgaacaaaGAGAACTAAATATCAACTAAACCGTGTAAGTAGAACAAAGTCTACAACTCCATACTGCTCACAGAGCTTCATACATTTACCAAGAAAGTGAGTCCATTTTCTCAGATATATAGATACAAAAATAGATCAGCAAAATCTATGTGCCATTTACAGTACGTAACAATCACTGAGTGAGTTTGACCATCGCtcaagaaaaggaaagaaactaGTTCAAGACAGATTTCACAGGTTGACCGCAAAGAGATCAGGACACTTGTAAAGACAGAGCGAAAGCGCTGAGAAGCCTTCTTACCATCACATACTCTATAAACATCCTCACAGTTTCATCGCTGGTCCTACATCTCTAGTGTTGCAGTACTGAGTGTCGAGTCTCAGGTGCTAAATTTGAACATTCAGGATCGCAAGACGAATTTAATACAAAAGATAAGAGGGAACAGTCTTTTGTAAAAGCATGGCAAATACGCATCCATTTTATAAAGTGTCAGCTTAATGCAGCCTTCATTTCACCACGTTAGAAACTGGTTTCGTAATGTTCTCGTGATTCAGAACAGTCAGAGATTTGACTCTAAAGTTGAAGGTAATGCTAATGATAATGCATGTGCTCATTGTTCTTCATCAAGAATGGTGTGGCATTAAAACAAAAGTCCTATCCTTCTTGGCTGTTAATGTTATATTgagaatgaatttttttttctgtttgttttgctgaTTGTGTTTCTAAATGCGCAGCATTAAATTCAGAGTGAGGAGAATAAAAGAGCTGACATATAATGCTGAACGACAGGCTGTATGTGGTGAAGACTGGATTGGCACTCTCATAGTACAGTGAAATAAACTAAGTCCCTTATTAGAACACCATCTAGAGAATCTGATCACATCTTGAGGAACCCAGCCATCTGCCAgagtttccattaaaatgccTCAGAATGGCATCTAGTCAACCTGACATTAATTGTACCCCTGTACAACTTTGGTAGGTCTGAGCAATGTAATCTTAGGACAGCAGTAATAATCGgagctaaaatattttaactcgGCTCATCTCTGTCGATCTTTCACGTCTGGATCTCAGACATATATCCAATTGGTTTTCCTCCCTTACTGTGCCTTAAACACCATAACCCTATGTTAAGctgaacaaaacagaaacatcaagttaaaaatatacaaataaatatctgaataaacataaaactCATTAGTGTTTCCTTCATAAATGCTGTGGCATTTCTAACCCCGTTCTCACCTTTTTCTCTAACCCGTTTCCCACAGTGCATTGGGAAGGAAAGCAGATTACATCCTTTTGTTTCTCATAATGCCAGTACCAGTGAGGGCCAGCTCTGTCGTCTTGGGGCCGTTTGAGGCCCTGACCTGCTCTCTGTCACCCATGCCTTTACACACATCATTGCCATCACTTGTTGACATTCTAGGACTCCAAAAGACTGTGCCATCGACACACCTGTTGTCCCTTCGATTCCTTCATCTGTGTCCAGTGAGTCAGCTCCTCCTCTCCGGAGCTGTTCAGCCCCAGAGAGATCCAGCCAATCATCTCCTTCCGTTTCATGCTGCGCTTGTTGTAGACCGACAGGATGAGCGTGACGTCGGAGAGCTGGAAGAGAGCTACCTGAAACACAAAGGTCTCCTTGTAGGTGGGGTTGGGTTGGCCTCGGCAAATGGACGTCTTGCACTTGGACATCTCTTGACCCATTGAGTTCAGCAGAGTCAGCTTTACGTACGTGTCTGAAACAGGAGGAAACAGGACGTCAGTCAGAGAACATTTGGGATCAAATCAGTCAAGAAGACTAAACTTGATATGATCCTGAGAAATTTGAAATGACTTTCCTTGGCACTTTCTTACAAAAACATCACCTGATCAAACCTTTTGAACTGCGACTCTACAGATGCATTGAGAGCAGACTCTGCGGTAGCTCTAGGCCTTTCACCGGGTTTAATTCAGAGCGCAGTTGAACTCCTGCGAGCCTGCTTTCTGCTGCCCTGCCTGAATTCACTACAATACAACAGACGTCGGTATTCTCTGTGTCTTTGTGTCGGGGCGACGCTTCTGTTCTGCGAGTCATCGAGTGCGGGCTTCCTGTGGAGTCATCCTGCTGCGTTTTCAAGAAAACGTTTCACTCTCCTCTATTTTTCCAACTAATAGAAGAGGCAAGCTAAAGAAGCGCTGATTTCAGAGATGGGAACACAGACTCGTACCTGACACTGAGGAATCATCTCCAGCTCCTCAAGCTGAATGTGATTTCAATGTATCCAGTTTACTTACTTCCAATGTACAATCCAACGTAACGGATTTCATTAACGGTTAAGAGGGCTGATTAGACTTTGTGATGCACTTATTCAGAGATCTCAACACTTCCGTCACAGCCATAGAGATCAACTTCTAGTATTCTACACTATGTCCCATTGCCCGAAATCCTGGTCATCTGAATTGATGAAGTTATTTATAGACAATTACTTTCATGCATACATGTACAGCatcattttcctttttgcatTCAGGTCAGAGAAGTTAGAGTCAGAGaagattttatgtccatagaaagcacattaaatgtaagtaaatgtaagtctacttttaaggtttattGTGCTTGAAATCAGTAAAACATTCTTCTGTGATACAGAGGAAAATGTacgatatttatttttagctcagaaatgcaaaaacaaagatgaaataaactaaaacattttgggggaaaacaacaatttaaagctgtagtacacttattgtttttaatgcctAAACCCTGTTTAGTTTTTGACCTATTTCCAAATATTCCCCTTGCAATGCAACTACTATCCATCTGCTATGTTAAagctattatgtattttaaaattaattatatatgatacattttataagacattgtgtgtgtgtgtatatgtaactaatacatttattgtgtataaaacGTTTCCaatgtgtaaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137667 lncRNA upstream 23455 11727823 ~ 11728484 (+) True G93001
TU137645 lncRNA upstream 123373 11628359 ~ 11628566 (+) True G92984
TU137626 lncRNA upstream 133127 11566030 ~ 11618812 (+) True G92974
TU137632 lncRNA upstream 147780 11603697 ~ 11604159 (+) False G92977
TU137616 lncRNA upstream 193699 11543053 ~ 11558240 (+) True G92968
TU137801 lncRNA downstream 48419 11807028 ~ 11807246 (+) True G93113
TU137844 lncRNA downstream 319028 12077637 ~ 12079902 (+) True G93153
TU137864 lncRNA downstream 340085 12098694 ~ 12099226 (+) True G93166
TU137865 lncRNA downstream 340997 12099606 ~ 12100355 (+) True G93167
TU137867 lncRNA downstream 346124 12104733 ~ 12107484 (+) True G93169
XM_043256273.1 mRNA upstream 27579 11712438 ~ 11724360 (+) False hif1aa
XM_043256274.1 mRNA upstream 27579 11713580 ~ 11724360 (+) True hif1aa
XM_043256083.1 mRNA upstream 43231 11693923 ~ 11708708 (+) True prkcha
XM_043254882.1 mRNA upstream 61698 11681351 ~ 11690241 (+) True slc38a6
XM_043254883.1 mRNA upstream 73327 11662380 ~ 11678612 (+) False mnat1
XM_043254599.1 mRNA downstream 117195 11875804 ~ 11881877 (+) True osr1
XM_043256201.1 mRNA downstream 263951 12022560 ~ 12024291 (+) True LOC122357024
XM_043256198.1 mRNA downstream 265793 12024402 ~ 12029159 (+) True LOC122357022
XM_043256199.1 mRNA downstream 270842 12029451 ~ 12031896 (+) True rdh14a
XM_043255552.1 mRNA downstream 343364 12101973 ~ 12104666 (+) True mtres1
TU137630 other upstream 147087 11603697 ~ 11604852 (+) True G92977
TU137635 other upstream 147715 11603697 ~ 11604224 (+) False G92977
TU137640 other upstream 174080 11571660 ~ 11577859 (+) False lrrc9
TU137330 other upstream 533764 11215492 ~ 11218175 (+) True G92772
TU137332 other upstream 536852 11213526 ~ 11215087 (+) False G92772
TU138047 other downstream 813022 12571631 ~ 12575212 (+) True G93296
XR_006252318.1 other downstream 828277 12586886 ~ 12588853 (+) False mgme1
XR_006252431.1 other downstream 1458049 13216658 ~ 13216757 (+) True LOC122357146
TU138522 other downstream 1980998 13739607 ~ 13909603 (+) True G93613
XR_006252357.1 other downstream 2595507 14354116 ~ 14367135 (+) False frmd6

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU85200 True 1078 lncRNA 0.35 1 CI01000012 8337857 ~ 8338934 (-)