RNA id: TU138033


Basic Information

Item Value
RNA id TU138033
length 896
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G93285
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 12595922 ~ 12597301 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cATATTGAGATTAACCATGGTTTATTAGTAAAGTAGGAAGTAATAcagaaacatgcattttatcatttagaaaTTCCTACAAGTAGCTTTTTCGGAGCAATGGCTAATGAGATTACACAAttatgtgttgatgatgtgtaTGTTATCAAAAAATTGGTTTTTATCAAGAGCAAAGACTTAAGGTTTACCATTATTACCCATAGCAAGTACATTTTATTGCTgcatgaatgttaaaaaaagctgtaaactgcattaaaaacaagctCTACTGCAGGCAGCTGTTTTCAAGGactttaatgtactttttcCATGGCTGGCTCCAAACTGTTATTTTGCATGGAGTGACCTTGAAGGAAAAGATAAAAAGGGTCAATCTCTTATAACATGGAAATTAGGGGGGAAAACCTCCCAGAAAACCACAATACTGTAAATTACACACAGTGTGTCTTACCCTTGCAACACTGGGATCCTCATGAATGGCACACAGGGTTTCAACGTCACCCTTTCTGCAGCTGGTTCTGCCGATGTTCACATTGAAGATGTATTTCAGGCCAGACACAACTGTTTTTGGACACTGATGACCTCGGAAACCCGACTCTCAAACGCATCGTTGCTTTGTCTGTTGTAGTGGGCCACTGCGAACTGTAACGCATTCTGAGCTCCTTCATCTTCCATGTCTGTATCCATTAGGCCTCCGGTCATCCCAGCGTTCGCCACGGTCAAAATCATGGCCAAAAACGGCACAATCATCTTAAAATACATACTGAAACCGGGTTACTTGACTCACACTATGCTGATTCTTCCTTGTTATGTCGACAAACTGTAACCAAATTTGCTCGCCAAGATTATATAAACAACCGTCACACTGTAGCTCTGCGTTTAGGGGCGGGGCGTCG

Function

GO:

id name namespace
GO:0005669 transcription factor TFIID complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138044 lncRNA upstream 26822 12568484 ~ 12569100 (+) True G93295
TU138036 lncRNA upstream 60858 12533985 ~ 12535064 (+) False jag2a
TU138024 lncRNA upstream 145476 12448374 ~ 12450446 (+) True G93280
TU137947 lncRNA upstream 159279 12431949 ~ 12436643 (+) False LOC122357045
TU138003 lncRNA upstream 210304 12385307 ~ 12385618 (+) True G93267
TU138058 lncRNA downstream 4890 12602191 ~ 12602541 (+) True G93306
TU138293 lncRNA downstream 559629 13156930 ~ 13158438 (+) False tasp1
TU138317 lncRNA downstream 566736 13164037 ~ 13164313 (+) True G93474
TU138346 lncRNA downstream 590284 13187585 ~ 13191795 (+) True G93485
TU138376 lncRNA downstream 749560 13346861 ~ 13348038 (+) True G93512
XM_043255083.1 mRNA upstream 6924 12586887 ~ 12588998 (+) True mgme1
XM_043255084.1 mRNA upstream 7591 12586886 ~ 12588331 (+) False mgme1
XM_043255091.1 mRNA upstream 36404 12557143 ~ 12559518 (+) False cfl1l
XM_043255090.1 mRNA upstream 36404 12557148 ~ 12559518 (+) True cfl1l
XM_043255045.1 mRNA upstream 60851 12502385 ~ 12535071 (+) True jag2a
XM_043255067.1 mRNA downstream 8542 12605843 ~ 12610037 (+) True ephx5
XM_043255070.1 mRNA downstream 16476 12613777 ~ 13074499 (+) False macrod2
XM_043255069.1 mRNA downstream 16477 12613778 ~ 13074499 (+) True macrod2
XM_043255071.1 mRNA downstream 537172 13134473 ~ 13158440 (+) True tasp1
XM_043255047.1 mRNA downstream 896518 13493819 ~ 13521130 (+) True jag1b
XR_006252318.1 other upstream 7069 12586886 ~ 12588853 (+) False mgme1
TU138047 other upstream 20710 12571631 ~ 12575212 (+) True G93296
TU137630 other upstream 991070 11603697 ~ 11604852 (+) True G92977
TU137635 other upstream 991698 11603697 ~ 11604224 (+) False G92977
TU137640 other upstream 1018063 11571660 ~ 11577859 (+) False lrrc9
XR_006252431.1 other downstream 619357 13216658 ~ 13216757 (+) True LOC122357146
TU138522 other downstream 1142306 13739607 ~ 13909603 (+) True G93613
XR_006252357.1 other downstream 1756815 14354116 ~ 14367135 (+) False frmd6
XR_006252421.1 other downstream 2509157 15106458 ~ 15226183 (+) True LOC122357077
XR_006252370.1 other downstream 2657773 15255074 ~ 15275234 (+) False fam135a

Expression Profile