RNA id: XM_043255045.1


Basic Information

Item Value
RNA id XM_043255045.1
length 6503
RNA type mRNA
GC content 0.43
exon number 26
gene id jag2a
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 12502385 ~ 12535071 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGATATAGTGAGTGCAGCGCGCTGGAGGAGCGAGtggatgtatgtgtgtgacttTCATCTCATCTTCTGGAGGTCTTGCGGAGAAAGGAATCACGTTGAATGGCTGGATTTTTGTGGATAATGATGcatatgtgtgttttctttttttaatcatgtccTATTAACTTCATAGGAGTCATGCATAACTATTTTGGAGCTTGTTTCTCAGTAGTGTTCTTAATTTTGACGTTTTGGACTGAGgtGTGCCAGTCGTCGGGTTATTTGGAGCTCCAGTTGATCAGCGTGGAGAATGACAGGGGTGAGCTCGCGAATGGAAACTGCTGTGACGGCGCACGGAGCGCGCAAAACGGTTTGTGCGACCAGGACGAATGTGACACGTACTTGAGAGTGTGTCTAAAGGAATACCAAGTGGAGGTCACCACATCTGGCTTTTGTACGTACGGCACGGGAAGCTCGAGCGTGATCGGGGGGAATACTTTTCAGTTGAAAGGATTCAATGGAAACCCAAACAAGGCCAATGACCTCGGGACCGTTATCATCCCCTTTCAGTTCGCCTGGCCGCGAGCGTACACACTGATCGTGGAAGCTTGGGACTGGGACAACCAAACGATCCCAGACAGCAGTGATGATCTGTTGATCGAGAGGAGTGTTAATCGTGGAGAAATGAATCCCGGAGAGGAGCGACAGCTTATTCAGCAGAAGGGCCGAACAGCCAGCATCCAGTACAGTGTGCGTGTGCGCTGCGACCGCCATTACTACGGCAACAAGTGCAACAAACAGTGTCGCCCCCGAGATGATTACTTTGGCCATTACACATGCGATCAATTCGGCAATCATCAGTGCATGGAGGGCTGGACTGGGCAAGACTGCAAAAAAGCTATCTGTAAGCAAGGCTGCAGTGAGCTTCACGGAAGCTGTGACACTCCGGGAGATTGTGTGTGTAAGTACGGCTGGCAGGGCCCACTGTGCGATGAGTGTTTGCCGTACCCAGGCTGTGTGCACGGCACCTGTGGGAAACCATGGTCCTGCACCTGTGAGAAGAACTGGGGAGGGCTTCTCTGTGACAAAGATTTAAATTACTGTGGCACACACAAGCCCTGTGTAAATGGAGGCACGTGTCTAAATACAGAGCCAGATGAATATTTCTGCTCCTGTCCAGAGGGTTACTCCGGCAAAAACTGTCATATCGCTGCGCATGCGTGCATGTCAAACCCATGTGCAAATGGCGGGACATGTCATGAGCTGGCTTCAGGGTTTGAGTGCCAATGTCCCCCAGGGTGGGACGGCCCAACTTGTGCTAAAGACAAAGATGAGTGTTCGTCAAACCCGTGTGCTCATGGGGGAACCTGCTTTGATCTGGAGAATGGCTTTGAATGTTTATGCCTCCCACAGTGGACCGGCAAGACCTGTCAGATCGATGTGAATGAGTGTACAAGGAGACCTTGTCTAAATGCTTACGCTTGTAAAAATCTAATTGGTGGATATCATTGCAACTGCTACCCGGGCTGGGCGGGACCGAACTGTAATATCAATGTCAACAGCTGTTATGGACAGTGTCAGAATGGAGGAACCTGTCAGgATGGTCGTCATGGTTATGTGTGCCAGTGCCAGCCGGGCTTCATGGGAAGACACTGCGAAGTGCAGCAAAGCAGGTGTGCCAGCTCCCCTTGCCAGAATGGTGGGCGCTGCCGTTCGCTAGCCACGGGTTatgagtgtgagtgtctgtACGGATACACCGGAACCAACTGTGAGGTGCAGGTGGATCTGTGCAGTCCAAACCCATGTCAGAATAAAGGCCAGTGTCATTCTATGCAGGGAGATTTTTACTGTGCCTGTGCAGATGAATATGAAGGAAAGACATGTAGTCAGCTACGAGACCACTGCAAAACCAGCACCTGCCAAGTGATTGACAGTTGCACTATTGCCGTGACAACCAATGGCACAGCAAAAGAGGTTCGGCACATCTTATCAAATGTGTGTGGTCCTCACGGGCGCTGCATCAGTCAGTCAGGAGGAAACTTCACTTGTGCCTGCCAACCAGGATTCACTGGGGCATACTgtcatgagaATATAAATGACTGTGCGTCATATCCTTGTCAGAGCGGAGGAACATGCATTGATGACATCGACTCTTTTCGCTGTGTCTGTCCTAATGGCTTTGATGGGCAACTCTGTGAACTGGAGGTGAATGAGTGTAGTGGTGAGCCTTGCCTAAATGGAGGCATGTGCATTGATCTGCTGAATGATTTCTACTGTCACTGCACTGACAACTGGAAAGGAAAGACGTGTAACTCACGAGACAGTCAGTGTGATTCCAGTACATGCGCTAATGGAGGAACATGCTATGATTATGGAGACTCCTTCCGATGTGCATGTCCCTCTGGATGGGGTGGCAGTACCTGTAACACAGcgATGAACAGCTCGTGTGAATCTAATCCGTGTCTGAACGGTGGGACTTGTATTGGAGGGGGCAGCGTGTTCACCTGCATCTGTAAGGATGGATGGGAGGGGCCTACCTGTGCTCAAGatGTTGATGACTGCAACCCTCATCCATGTTATAATGGGGGACAGTGTGTGGACGGGGTCAACTGGTTTCGCTGTGAGTGCGCTCCTGGATTTGCAGGACCCGACTGTCGAATTaATATAGATGAGTGTCAGTCCTCTCCCTGTTCGTATGGAGCCACATGTGTGGATGAGATTAATGGATATCGCTGTCTTTGCCCCATGGGACGAGCAGGACCACGCTGCCAGGAGTTTATTGGTGTTGGAAAGGCATGCGATCGCTCTGGGGTGCAGGCTAATCATGGTGATCGCTGGGAGGATGGCTGCAACAGCTGTCAGTGCATGAACGGAAACATCAGATGCACTAAAGTGCATTGTGGTCATCAGCCCTGCTGGTTGCAGTCAGACTCTGGTGAGCCACAGCGCCCCCTGTGCCCACTAGGACAGGAGTGTGTAGAACATCATTTCCTGTCTTGTCTTCGTCCTCCATGCAATCATCTGGGTATATGCTCCACTCGTGAACGTCTACAGACAATCGGCACTCGGTGCCTACCCAACAACGGCCACTTAGACGACAACTGTGCTCGTGTTACGCTTGTATTTGACTCTGATAGCATCCCGCAGGGCACTACTGCTGAAGGAGTCTGCGCTGAGTTAACGTATCTGCCAATCACACGAACCCTGGCCAAAGACCACACCCTTTCCATCCTTTGCGACCAATCACCTTCCAGCCAAAATGCAGTGGAGGTTGCTATGTCATATGAGCAAAACACCTTTGCTGAGGGACGAGCTCAGATACAGGATGTTGTCCGCTCCATCATTGATATTCTGTCCAAACCTCACAACAGCACTTTACTGTTGGCTGTGAGAGAGGTCAGAGTTGACACTCAGGAACCGCGTCCCCAAGTTGGTTACCTCATTCCGTTGCTGTGTGTGCTGTTTGTGGTATTATGGATCTCATGTGTCATCGTCTGTGTGTGGTGGTTCAGGAGACGCAGGAAAGCGAGACAAAGAGAGGACACGCAGATGGAGGAGAGCATCAACAACCAGCGTGGGACACTACTGAGCACCCGCACGCCTCACAAAGACAACACTGACCCGCTGCAGGAGAACAAGAACCTGCTTTACCCTCTGGATCGGGTCGGAGACGGAGCTGAgcgagaggaagaggaggaagaaggaGATGaagagagcgacagaggactggtTCTGCATAAGTGCTCATCTCTTTCGTACACTAAAGGGGACGCAGTGTACACTATTCACACTACATCCCAAAATCAGCCAAACAGGACACACTACAGCAGAAAAGATAACCGCTGCAAGAACAATGTGAATGAGAGTTTAAGCGAGCACACGAAAGATCATTATGTATGAAAGAACCAAAAAAACTGGacaaaaatataagtattttttgCTGTCTGATCTGAAAGCTTCTGGGCTTGTGCGATTGGTGTTTTTCATCCTTTTTCATCATTGGGTAGTCAAACAAAACAGGGATTCGTGTCACAAAAATGCAGCAAATGAGACATTCAAAGAATggttttcaaaatctttttcttttgtttacactTGCACTCACTTTCCTTAAAAAGAAGGTCATTTTTTACACAAAGCTGAACTTTGAGATTATGTCTGTGAACTGTGGCGCGACCTTTGACCCTTGGGGCTGTGGAGGAATAAGAGATAGGCagctttaaagtgtttttgattATGTCCAGACCTGCCCAAAGTCAAGTGTTAGAAGCCGTTAAATCTTCCAGaggtatatatacacacaagtgCCTCGGTGAACCTTTACGATAGCGCTTAccttttatatacatttttcataatacaCATATGttgattcatgtttttgttaGCAAATGCTATTGACACACTTAAAtgggtagttcacccaaagaaaatttctgtcaacatttactcaccctcatgtcattccaaacatgcatgactttcttcttctgtgtaaaaaaaagttacataacaGTGTAGGAAAACATTTAAGAACTGGAGTGTTATTATTCACGAAtagctctattttttttttgggttgttCGGAGTTGAACTAAATCAACTGATTTGTTGAAATGCTTCATCTCAGAAGAATCTTTAGttcattcatcaaaaatatttttttaatcaaaaaggaGATTAAGAGTGGAGACcaagatattttgtgaatactgtctaaagtttgtttttgataCAAATCTGTTGTGTGAGAATACTTTATAAAGTGCtcatcattcatttttgttacacagaaaagagaataaaaataaaataaaaataaaaaataaaattttggacagcatgagggtgagtaaatgatgacaagcATACTTTTTCAGTACACTAAGATAATGTTAAGTATAAAAGGTTTACTGTTTTACATTGAAATTCACTTTCTTTGGGAATTGGTACTCATAGTCCAGACAGTAGTATTctgtttcgttttgtttttgtttttttcaagtgACAGCCATATAAAAAGAACAGTCATGATGTAAAGAATCAAGGGCCACTTCAGTCATTGCACTATTGTGTTGTCGCAAAACACTTGGGTTTTTGGTCACACAGTAGGGAGCAAtgattttaattctttaatcaCTATGAGATAGTtcattatattgaaaaaaatattcatgtacATATGTAAATAGTGAAAAAGACATAGCTGTGTATATTTGAGTTTAGTAAGTTATGTGACACCTTTTTATCATTGTCATTCTTagaattattactttttcttaTTCTATCCTTTAGTTGCTCTCCTTTTCAACAGTGTCattccttttatttatgttgtcagaaaatgttttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgtaaaaggGCCACAGGTTGGTAGTCTATCTGTGGAAACTCTATAAAAATACTAGATGATCAATAGATGATCTATCTTCATGTTAGAATAGattatttgtgctgtttttatgattttcctAATGAATGTCGACTAAGGATTGGACACATTGACCATGCTGAAAGAATGTTTTGCCACTGATCAAATGCTGACTTCTTCTGAAGGTCTACAGTACTTCATTGGAAAAGACTTCAAAGAAATATGCTGCATGTTCGAGTGGCACTTTGTTTCCTTGGAAAAGTCCAACACCTGCATTTTCAAACCACTGTCAGTCATGATATAAtcatatgtttatattagtgTCCCAGACTGTGTGGTTTTTAAGTTGGATGTTGGAAGACtttggaagatttttttttattataattcttaATGTTTTCAGAACATCGTTGCTTTGTATTATTATGTTACAATTCAAAATGAACCACAAACGGACCATAGTATTGACCCATGTCAAAGACAGAAAACACTTGAGTTCAAAGTATATCTCCTGTCTTAGTATTGTGTTAAATatcagattttatatttataaaatggtaCTATATTGCTATACTAccatttttcaaaagaacacTATGAGTAAAGATTTATGTTATCAGAAATCCTCCCTTGTCTGGGGCGGCTAGGGTATTTTTCTCCCTTTATTCATGATCTGTTCTGACGTATTTGATTGGGGTCAAATCAAATGCAATTTAGAATTTTTGGAAGGTCAGAAAAATTGTATCAGTGCATGTTGCTTTAGCTGAATGAAGGGaacaatttatgttttttgtttcatttgttgtCTTTAGTGCACAGAAAAACAATACAGTTGAATATAGAATTGATTGGATGATGCGAAATGTGACTAATTCAGATGAGTTTAGATTCTGAATCATGTCACTCCTcaatttttcattattgtaatattagGGAATTAAAACACTCCCCTGTCATGGGAAAACAAGTCCATCACATTTCTGGCTGTGATTAGTTCTACGTGCACTGATGCTCATACTGAATCTGgcatttcatttgttaaatcTGTTTGATTTTCCCAAgtatttattaaagatttttgtaccta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138024 lncRNA upstream 51939 12448374 ~ 12450446 (+) True G93280
TU137947 lncRNA upstream 65742 12431949 ~ 12436643 (+) False LOC122357045
TU138003 lncRNA upstream 116767 12385307 ~ 12385618 (+) True G93267
TU137945 lncRNA upstream 121534 12379709 ~ 12380851 (+) True G93219
TU137949 lncRNA upstream 128254 12363065 ~ 12374131 (+) True G93222
TU138044 lncRNA downstream 33413 12568484 ~ 12569100 (+) True G93295
TU138033 lncRNA downstream 60851 12595922 ~ 12597301 (+) True G93285
TU138058 lncRNA downstream 67120 12602191 ~ 12602541 (+) True G93306
TU138293 lncRNA downstream 621859 13156930 ~ 13158438 (+) False tasp1
TU138317 lncRNA downstream 628966 13164037 ~ 13164313 (+) True G93474
XM_043256343.1 mRNA upstream 8646 12488581 ~ 12493739 (+) True LOC122357113
XM_043256344.1 mRNA upstream 8646 12488770 ~ 12493739 (+) False LOC122357113
XM_043255844.1 mRNA upstream 16723 12450571 ~ 12485662 (+) True brf1a
XM_043255843.1 mRNA upstream 16723 12451643 ~ 12485662 (+) False brf1a
XM_043256226.1 mRNA upstream 65808 12431919 ~ 12436577 (+) False LOC122357045
XM_043255091.1 mRNA downstream 22072 12557143 ~ 12559518 (+) False cfl1l
XM_043255090.1 mRNA downstream 22077 12557148 ~ 12559518 (+) True cfl1l
XM_043255084.1 mRNA downstream 51815 12586886 ~ 12588331 (+) False mgme1
XM_043255083.1 mRNA downstream 51816 12586887 ~ 12588998 (+) True mgme1
XM_043255067.1 mRNA downstream 70772 12605843 ~ 12610037 (+) True ephx5
TU137630 other upstream 897533 11603697 ~ 11604852 (+) True G92977
TU137635 other upstream 898161 11603697 ~ 11604224 (+) False G92977
TU137640 other upstream 924526 11571660 ~ 11577859 (+) False lrrc9
TU137330 other upstream 1284210 11215492 ~ 11218175 (+) True G92772
TU137332 other upstream 1287298 11213526 ~ 11215087 (+) False G92772
TU138047 other downstream 36560 12571631 ~ 12575212 (+) True G93296
XR_006252318.1 other downstream 51815 12586886 ~ 12588853 (+) False mgme1
XR_006252431.1 other downstream 681587 13216658 ~ 13216757 (+) True LOC122357146
TU138522 other downstream 1204536 13739607 ~ 13909603 (+) True G93613
XR_006252357.1 other downstream 1819045 14354116 ~ 14367135 (+) False frmd6

Expression Profile