RNA id: TU138317


Basic Information

Item Value
RNA id TU138317
length 277
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G93474
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 13164037 ~ 13164313 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTGTGGATGGTGTGCTCGAGTGAGAGATAGAGTTGGTATGGGGCAGGATCTGCCACCGCTCTAACACAGGcctgatgttttaaaataaagcaggcTGTCGGCTTTGATGTTGAGGGGCCTCTGGAGCAGACGGTCTGATTCAATAAAGATCACTGCTGCTTATCCCGCTCCACGCCGTAAGCTTAGCCTTCACTCCAAAGTGCTTTTATGAAGGTGAGATGGGAGAAGACCATGAGAATTCACTCGATACTAACAGCAGATGTACTTTAAACCGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138293 lncRNA upstream 5599 13156930 ~ 13158438 (+) False tasp1
TU138058 lncRNA upstream 561496 12602191 ~ 12602541 (+) True G93306
TU138033 lncRNA upstream 566736 12595922 ~ 12597301 (+) True G93285
TU138044 lncRNA upstream 594937 12568484 ~ 12569100 (+) True G93295
TU138036 lncRNA upstream 628973 12533985 ~ 12535064 (+) False jag2a
TU138346 lncRNA downstream 23272 13187585 ~ 13191795 (+) True G93485
TU138376 lncRNA downstream 182548 13346861 ~ 13348038 (+) True G93512
TU138576 lncRNA downstream 595243 13759556 ~ 13760734 (+) False LOC122356417
TU138574 lncRNA downstream 596739 13761052 ~ 13930287 (+) True G93643
TU138585 lncRNA downstream 697738 13862051 ~ 13862660 (+) True G93649
XM_043255071.1 mRNA upstream 5597 13134473 ~ 13158440 (+) True tasp1
XM_043255070.1 mRNA upstream 89538 12613777 ~ 13074499 (+) False macrod2
XM_043255069.1 mRNA upstream 89538 12613778 ~ 13074499 (+) True macrod2
XM_043255067.1 mRNA upstream 554000 12605843 ~ 12610037 (+) True ephx5
XM_043255083.1 mRNA upstream 575039 12586887 ~ 12588998 (+) True mgme1
XM_043255047.1 mRNA downstream 329506 13493819 ~ 13521130 (+) True jag1b
XM_043255055.1 mRNA downstream 394780 13559093 ~ 13563325 (+) True mkks
XM_043255057.1 mRNA downstream 394780 13559093 ~ 13563325 (+) False mkks
XM_043255054.1 mRNA downstream 394780 13559093 ~ 13563325 (+) False mkks
XM_043255058.1 mRNA downstream 394881 13559194 ~ 13563325 (+) False mkks
XR_006252318.1 other upstream 575184 12586886 ~ 12588853 (+) False mgme1
TU138047 other upstream 588825 12571631 ~ 12575212 (+) True G93296
TU137630 other upstream 1559185 11603697 ~ 11604852 (+) True G92977
TU137635 other upstream 1559813 11603697 ~ 11604224 (+) False G92977
TU137640 other upstream 1586178 11571660 ~ 11577859 (+) False lrrc9
XR_006252431.1 other downstream 52345 13216658 ~ 13216757 (+) True LOC122357146
TU138522 other downstream 575294 13739607 ~ 13909603 (+) True G93613
XR_006252357.1 other downstream 1189803 14354116 ~ 14367135 (+) False frmd6
XR_006252421.1 other downstream 1942145 15106458 ~ 15226183 (+) True LOC122357077
XR_006252370.1 other downstream 2090761 15255074 ~ 15275234 (+) False fam135a

Expression Profile