RNA id: TU138346


Basic Information

Item Value
RNA id TU138346
length 1464
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id G93485
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 13187585 ~ 13191795 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttttctgtgaactactcctttaagttTAACAAATTACTATaacataaatcatttaatgTTCTTGAAAGATTATGTGCAACAAagccacatttatttttatcgagaatacagaaaaaactgtaataatttaaaatatgatttttaaaaaacgttttttaatttttatcaattttgtatttttttaaatgttatttattcctgtcatggcagctattactccagtttccagtgtcacatgatcctttagaaatcattctcagatgctaatttgctgctcaagaaatagtttttgctactttttgtggaaaattttaaagaaaagaaaaattacccctcattttactcaccccaaatttaattttcttctttcagacgaacacagtttaaaatgtaaccTGGTTATAtccgatttacagagcttcaaaataatggccactatccacaagcattactaagcttggaagagccaggataaacttttaaaaaatacttgactatgtttgtctgaaagaagaaaatcatataCACTTAAGATGAGTTCGAGGtcagtaaaatatggggtaattttacatttttggggaactatttctttaacgcTGCTCTTTAGTATTCCCTCCTATCAAGGTGTGAGCTGCAgtgagattaaaaacaaacataatgtATTCTCTAAAACCATAAACATATGGATTAATGCATTATCAAAAACAGAAGACAGCTTGGGAAAACCCTTTTAACATCTGGTGCCATTCTGCTGATTCCTAATACCTGGAAATATGTGACTTTTCCTTGACTTAAGGTCTATAAGACCTTTAAGCCAGTCCTGTATTTTATTGAAATCTGTTTTCCATGAGTTatacgctgtaaaaaaaatatatttatacagttgTTAAATCCATGTGATTCCCCACATTTAGGACATGTTGGGTGGAGAATTTCAGTGTGTAATGACTGACTAGTTTGAAATCAACAACCTCTGACTGTTTTATTTAGTCATGTGACTTTCTAAAATAAGTCTCTTAGTATAGCTTTAGTGCctatatattgctttttataAACCAACCTTCTGTTGTTCCATCGACACCcatgatgcatttaattgcCCTGATGATCTGCTCCACCACAGGTGGGGACATGGCTGTAGCGTACACCGCACTGTGTGAGTGACTCCGCAGATAATCCACTAACtcctCTTTTTCCCAGCTATGTACCCGCCAGCAGCCCCGAAGCTCTTAGTGAAGGTGCCCATAAGAACATCCACTTCTTTGGGGTCTACCCCAAAATGTTCTGTAACCCCTCGACCTGTGAGCCCCACAGCCCCAATGCTGTGGGCCTCGTCGAGGTACAGATAAGCCTTGTACTTTTTCTTTAGTGCTAAGATCTCTGGCAACCGGACTAGAGAGCCTTCCATactgaaagGCCCTCCACCATGATGAGGATCTTCTTCCAGGCACGATGGGTACGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138317 lncRNA upstream 23272 13164037 ~ 13164313 (+) True G93474
TU138293 lncRNA upstream 29147 13156930 ~ 13158438 (+) False tasp1
TU138058 lncRNA upstream 585044 12602191 ~ 12602541 (+) True G93306
TU138033 lncRNA upstream 590284 12595922 ~ 12597301 (+) True G93285
TU138044 lncRNA upstream 618485 12568484 ~ 12569100 (+) True G93295
TU138376 lncRNA downstream 155066 13346861 ~ 13348038 (+) True G93512
TU138576 lncRNA downstream 567761 13759556 ~ 13760734 (+) False LOC122356417
TU138574 lncRNA downstream 569257 13761052 ~ 13930287 (+) True G93643
TU138585 lncRNA downstream 670256 13862051 ~ 13862660 (+) True G93649
TU138606 lncRNA downstream 753535 13945330 ~ 13950605 (+) True G93659
XM_043255071.1 mRNA upstream 29145 13134473 ~ 13158440 (+) True tasp1
XM_043255070.1 mRNA upstream 113086 12613777 ~ 13074499 (+) False macrod2
XM_043255069.1 mRNA upstream 113086 12613778 ~ 13074499 (+) True macrod2
XM_043255067.1 mRNA upstream 577548 12605843 ~ 12610037 (+) True ephx5
XM_043255083.1 mRNA upstream 598587 12586887 ~ 12588998 (+) True mgme1
XM_043255047.1 mRNA downstream 302024 13493819 ~ 13521130 (+) True jag1b
XM_043255055.1 mRNA downstream 367298 13559093 ~ 13563325 (+) True mkks
XM_043255057.1 mRNA downstream 367298 13559093 ~ 13563325 (+) False mkks
XM_043255054.1 mRNA downstream 367298 13559093 ~ 13563325 (+) False mkks
XM_043255058.1 mRNA downstream 367399 13559194 ~ 13563325 (+) False mkks
XR_006252318.1 other upstream 598732 12586886 ~ 12588853 (+) False mgme1
TU138047 other upstream 612373 12571631 ~ 12575212 (+) True G93296
TU137630 other upstream 1582733 11603697 ~ 11604852 (+) True G92977
TU137635 other upstream 1583361 11603697 ~ 11604224 (+) False G92977
TU137640 other upstream 1609726 11571660 ~ 11577859 (+) False lrrc9
XR_006252431.1 other downstream 24863 13216658 ~ 13216757 (+) True LOC122357146
TU138522 other downstream 547812 13739607 ~ 13909603 (+) True G93613
XR_006252357.1 other downstream 1162321 14354116 ~ 14367135 (+) False frmd6
XR_006252421.1 other downstream 1914663 15106458 ~ 15226183 (+) True LOC122357077
XR_006252370.1 other downstream 2063279 15255074 ~ 15275234 (+) False fam135a

Expression Profile