RNA id: XM_043255079.1


Basic Information

Item Value
RNA id XM_043255079.1
length 4261
RNA type mRNA
GC content 0.42
exon number 7
gene id LOC122356403
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 13520413 ~ 13558834 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCAGTGGTAAAAGGGCAGGAGGTGTGGTGGCGAACAGGCAACTGCCGCACAAGCGCTCCTGGGCCGACTGCCCGACACTAATCAGAGAGTGAGGGCAGGAGAAAGCGCAGTTAGGGAGGGTGAAACTGATAAGAGAAGGTAACGGGGAGCATCTTGGGAACTGCAAGTGATTGAGAGCAGAGCCAGGAATCCAAAAAGCCGAAAGCGACCCGGTTTGCCTCATGTGTTTTTTCAGCGGCTGGGAGTAGAAAATAGCACGGCTTAGCTGTGGACTTCGGTCAGGGCGGCGGGGACTGATTTGTGTGGGAATTACGCCATGCTGGTGGATCTTCACATTCTGCCCTTAGGCGGCCAAGACAATGCCAGCTGGTTCTCTCCAGAGCACAGGAAGGAAGTCGGCTTTCTGATTAGAGATGCATTGGAGCTGAGAGTGAGGCAGTTTCAAGAGGCCAGATACCAGAAGATCCAGCCCAAACCGAGGAAGGATCTTACCCTGACTGGCCCACTCTGTCTTAAAGgTGGGAATGTTCACTTGGCGGTGCACTTCATGAAACGACACGTCAACCTGAGATGCATTATCAGGCAGCACTACAGAGAGTTGCGTGTGTTTCCtgagcgtgttgtagtgtgtgccAGTCCTCCAGAGAATTCTGCACTTCCCAGAGGAAACATGAACCTGGATGTGAGTGAACCAAGCCATTCAAAGTATTTTTCTGGCTCAGGTAAGATGATAGATCCATTACCCAGCTCCACAGTAACGAAAAGAGCCATTCTTCAGAAGATTGCCAGACAGGCTAAAGTCCAACCCCAAGAACGCCAAGATGATCAAGCTGACAAAGCTGAGAAGGGGTCTGCTGAAGCATGTCATCCTGTCACCATATCGTCTGGCAGCTTGCTCACGGGTGAGTCATTGGATGCAGGGAAAGCCGTGTTGTCATCTAAATTAAGTAACAGTAAAGAGGTCACCGAACCACATATTGCTACCGGTCTGAAGAGACGAACACGGACCCCAAGTAGCTCAGGAGAAGACGCTGACCgccaaaagacaaaaagatCTCGTCTTGGAGAGCCTGCAGCATCAAGCGATTCCAACAACCCCTCTTCTGACTTTGCAGCTCCAGACTCCGTTTGCAGTCCCCAGCCTGAGATTTCACAGACTAACCAAAGCGGGCTGGCCGCAAGCTTGAGAGGCCTATCCGTCAAGCCCGTATCCTCTGGCTCCTCTATTAGTTCCAGATCTGTCGCCAGAGAGGGAAGAAAGGGGGGTGAGCCCAGAACATCCCGATTACGCCGGCTCAAGAAGTCCTGAGGGGCGCAGCGGCATCGAACGAGAGAGGATGTCTGACGCCACCACGATGGATGTTACAGTACACACTTCTACTGTAATACTGTCTGTCAGCGGCGGTTGCACAAGAGTTCACCACACACAGTCTCTGCACATACAGTACTTCCCTTTTccctttaaagtaaaaaactCGAAACTGCTTAAACGCTTGAATTAGATTACCAAGAAGCTCTGAAATATTTGAATCGACTCCACTAGCAACAGCTTAAAAGGAACTCAAGCAAACAGTAACTTCActctaaacaaaaacacaaatgcagttCGCGTTTTCGGCGTAAGATTTGTATTTCAGACTAGCGGGAGCCATTGAGCACACTGTGGCTTTAAGCCCAAATCTCTGGCTCCATCCGTCTGAAATCTCCACTCTTCCAGCTTCAGCTGAACACATGATTGATTTCGCTGTGTTCTCACATACACCGCGCTCCTTAAGCGATCAGGGGTTTTCACCGTTGGAGCCGACTGCCGTCTCCCTGCggttattatttgtaaatgtgttaTTGCTTTTCGTAACAGCTAAAAGTCTGCTGCGGGATGACTGACAACGTTATGGAACGCTGTAGTGGCGCTCGTGTCCGATATTTGGCTAATCACGGGTGCAGTCGACATTGATATAGTGCGTGATGGCAGGATGATTATATGTATGGACGTAAATTCGTTGAGTCACATGCTTTATTTTCCAGCCGTGCTTACAAATCACTCgatgtttatgtatttagtaTAATAGATATGTGTCATAAAAACATTATCAGAATATCCAAACGTTGTGCAGTAATAATCCCAAAATGTGGCAGTCGGAATGCTTCTGGTTTAgaattacagcatattttagtttatattctGATTTTATGTCATGAAATTTATTAAAGATAGCAAACCATTTGTTCTTAATCAAACAGTGTTTGCACTGATATTCTTGAAACTAAAGGTCCaaggattcatttaaaatggaatacAATCTACTGCCTGTTTTACTATTActtaatctataataataaaggaattctgatttcttttaattatatagTGCTCAGAATGATATACTGTAACGCTTTGAGATCAACCTTTGAGTGTGCATTCAAGTGTAACAGattactgaaaatgaaaaaattaatgttGGTTGGGAAAAATGTAGTGCTGTTTATTGATTTTGAGATGGGTTGGGTTTTAAGTGGACTAAATGTTTGGAGAAATCCAGCATACATCACCAAGGAGAAGACTGAGTTCTGACATTTTGATTGAGGCCAGGAAAATAACACGCATTTACAAATTAGAATTTTCACTTCATGtcaatttaaaaagaacaattttaaccataaaagaaaatgtcatcAACCCACTCCAAGCCCGTTCAActtcctttcttctgtggaacagcAAAAGGAAATTCTGGAGGCTGTGCTGAGCATTCATTTTGATGTAATTTCAACGAATGGAGATGGATGCATTCAAGTTTCAGAAATGACACAGAGcgcaataaaataatcataaaagttACTTGTGCATTATATCCAAAGTGTTCAGAAGTTCTAAATAGcctttgtgtgagaaacagagggaagtttaagttgttttttagCCAGTGTTCCTCTGCTGCGACCAAATTGAGTCAGCGAGTTTATCTCCAGTCTGATTCATAAATCATTTAGACAGGTTTTATGAACTGGACCAACTGAGTGATTGAAAAGATGTGACTCACAAGAATGATTCGTTCACAAATTGGACCTATTTCACCAATTATAAGAAAATCTTGAGTCAATGTTCGCTTCAATTTCTCACAAAGCCATCAcatgacttcagaagacttgaatATAGGGCACGAATAGTATTAACCATTTTGTTGATGTCTTTGTTCATCTTGAAACCTCCAGTTCTCATTGAGTGTGCATGGAAAACTGCTACCTTGCTTATCAAAATGGCTTCTTTGTGTaccacagaggaaaaaaaatcatatggaaaaaaaacacctcgACGGTacttgatgacagaatttacatgaTACATGACTGGAAAACATTGGGAAACCCCTTTCTTCTTCTCATCACCATAAGCTTCGTGTTTTGCCCTGCAGTTCTTTTACTGAATACCTCATTCATCATTTAGGGAGGGAGGTTCATTCGCAGCGTCAGCCTTCACATGGTACAGAGCACAATCAGACCCGCACGGCTGTACCACGAAAAGACATTTAGACCTTGTGCCTCACATAACATTACGTCAGCGTAAGAGAGGATTCGACTCCCAAAGCAGCACAATGGAGCACAAAtcgaaaacaaacatttaattttccttttatacaaaatgtttaataaatataacattcaaaaaatattgccaggaacaaactaaaaaacaaatttacaaTAAGGTCAAATATGAACATTGAATATTGCCATGATCTCATAGCATTTACAAATATGCGATAAGCTTGTCGGTTTGGTGTTTTAGAGAGCCTCGATATAAAAGAATAACGAAAAGAACACTACATGTGCACAGCAATAGAAACGGACTCCTGAAAGCAAGGCAGTCATCTACAGTGTTTTCATTGGCCCCCTACTGTTCAAGTATTCACAGCCTAGCTTATGACATACTGCAAACCGAAGCGGAAGAGAAATGATTTGTGTGAATCAGATTTACCAACAAGCAACTAGAAGACTCGTGttcccttttatttttgatttttttttaatgatttattttttttttctttcatctgtggCAAGCAATGTGTCTGCCACCAGGTATCCAAACAAAAAGCAGTCATGATGTTGACATTGCCTGCATTGAGAGTTGGTAAGAGTTGGCAAAATACATACAATAGTTTCAAATATTGAAATATCTGacaatgtataaaaagaaaattctcaGGCACACAAATGCCCatcttgtttttgaaaaaaaaaaaaaaggactgctttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138377 lncRNA downstream 173844 13347401 ~ 13347885 (-) True G93513
TU138371 lncRNA downstream 211516 13309952 ~ 13310213 (-) False LOC122356823
XR_006252323.1 lncRNA downstream 248588 13271278 ~ 13273141 (-) True LOC122356420
XR_006252320.1 lncRNA downstream 297193 13208439 ~ 13224536 (-) True LOC122356418
TU138456 lncRNA upstream 25991 13579527 ~ 13675111 (-) True G93562
XR_006252322.1 lncRNA upstream 69230 13622766 ~ 13650733 (-) False LOC122356419
XR_006252321.1 lncRNA upstream 69230 13622766 ~ 13650733 (-) True LOC122356419
TU138478 lncRNA upstream 100843 13654379 ~ 13655349 (-) True G93583
TU138485 lncRNA upstream 108214 13661750 ~ 13663911 (-) True G93588
XM_043255896.1 mRNA downstream 116186 13390572 ~ 13405543 (-) True LOC122356824
XM_043255895.1 mRNA downstream 196678 13310064 ~ 13325051 (-) True LOC122356823
XM_043255062.1 mRNA downstream 237107 13275699 ~ 13284622 (-) False btbd3b
XM_043255061.1 mRNA downstream 237107 13275699 ~ 13284622 (-) True btbd3b
XM_043255052.1 mRNA downstream 317497 13181337 ~ 13204232 (-) True sptlc3
XM_043255089.1 mRNA upstream 11128 13564664 ~ 13568025 (-) True srd5a2b
XM_043255086.1 mRNA upstream 17254 13570790 ~ 13580096 (-) True memo1
XM_043255064.1 mRNA upstream 125751 13679287 ~ 13684104 (-) True erlec1
XM_043255065.1 mRNA upstream 125751 13679287 ~ 13683990 (-) False erlec1
XM_043255063.1 mRNA upstream 125751 13679287 ~ 13683990 (-) False erlec1
TU138208 other downstream 924427 12557077 ~ 12597302 (-) True LOC122356414
XR_006252291.1 other downstream 1090951 12429197 ~ 12430778 (-) False tmem234
XR_006252352.1 other downstream 1722697 11771428 ~ 11799032 (-) False utp25
XR_006252349.1 other downstream 1990420 11526180 ~ 11531309 (-) False zdhhc16a
XR_006252282.1 other downstream 2302744 11200946 ~ 11218985 (-) False rassf4a
TU138426 other upstream 10886 13564422 ~ 13567925 (-) False srd5a2b
TU138887 other upstream 142536 13696072 ~ 13696792 (-) False map3k4
TU138915 other upstream 356803 13910339 ~ 13911837 (-) True G93875
TU138946 other upstream 525996 14079532 ~ 14082758 (-) True LOC122356235
TU138948 other upstream 606787 14160323 ~ 14164348 (-) True srsf5a

Expression Profile