RNA id: TU138490


Basic Information

Item Value
RNA id TU138490
length 2068
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G93592
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 14031382 ~ 14161320 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGAAACAAATTTTAGTGTGTGTAGTTTTATTAAATTCCATAAGGAATTACAGTGGTAGTATTTTTTTCAACAGTTTTtcttacaaatacaaatttatctGAGTAATTCCCCATAACTGGAGCacaagttttaaattaaaaagctaaaagttttttaaattattattttttaataaaagacaaaacaaaactaatactAGTGGCAGGTATACATTTAAACAGCAAACAGACAGTTCTTTAGCGCAGCTTTAACTATAAGCTGACATCATCGGCACAGCTCCTTACAGACTGTGTATGATAAATTATGAACCTATTACGGTCTGGACAAGCACGAAATATTTCCATTAAATTGCACCAAAACCTCTGCTGACCAGAAACAGAACGAGACTGACATCATTGCACATGTTTAATTATGGGATGGTTGGATTTGTTTGCTTTGACATGTTTTGGCTTTCTAAGGAGCAAGTGAGGCACAgtataatttgatttaaaactacTCTATATGAGTAACGAGGATTAAACAATCTCACCGTCTCGCGAGGCAGAGACAAAGAGATAGTTCAGAGCCTCGCTAAAGGCCTTATGAAAAAGGCATGTCTAATACCTTTATAACACTGAGTCATTAGCATCTACACGTGCTCATGTCACCTACAGGCAGGTATACTGTATGCATACAGGCTGTGGAACACTAATTCTTATGCTACATTTAGTGAGATTAAAATATAGTGACGTATGTATGtagcttgtattttttttttttagtgttcaCGAAACATCTACAGgtcatttcaccccaaaatcagaagaaatgcttttttggCCATCATGTTTTTCTAAATTGTGACAAATAACAGTCTTGTTACTCTAATGTATGGATGTTTTGTTTCCAAGTTTGCTGCTCAGTTTTCCCAAAAGTCATTAtagtgtttttgtagttttttttttttttaaccaacacTTTTCAGTAAGGTtcagtttgttaacattaataaatgcattgagtcTCATGAACTAGcgatgctttttttgtttattaatctAGGTTAATGTTAATTACTAATCATATTGTCGTTCACTgttaattcataaaacattaatattactttatacAACttgaaaagaaatgtgtatGAAAATGAACCAAGATTATTAAGCGTAAAAGTAttgctaatttttatttcatgacaCCTAATGCATGACCTATAGTAgtgagaataataaaataataatcacatgATAATTTTaaagttgtagtttttttttaaacaaaccaagGTACAACAAATcacaatgcaaatatatatatacatatatacatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatttttttttttttttttttttttCTGCCAAATACCAATAAACTTTATTCCAGAGTGTATATACAGGTATAACCTTCTGTTGAATTACCATAAAGACTCAAACAAAAATTAACAGGCGAGTTTGAGAAACAAAAGCCATGTACATTTCTCTACAGAAGTACTCCAGGATTgatattgatcaaataaaaatacaaaaacaagacattgtgtggtgggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacctctagtCTTAACCCATTTCGATATCATTTAAACCCACCCAGTTCCTCGGCATAAGAAATCAAAACagcttcatacacacacacatacattcaacTCACAGTAAGTAATTTACACTAAAGTAGCACAATGACATGCCACATTAATAAGTGAaggatttatatataaaaaaacaaaaaaaaaagtcaactatccacacacgcgcacacaaacacacagtttcaGTGCTGACTCTCTGCAGAAGGAGATCGAGAGCGGCTCTGTTTCCTCGGGGGAGATGGAGATCGGGAAGGAGACCGGTTGCTGGTACTCTTCTTCTCTGGGGTGCGACTGATTGACCGACTGCGAGAGCGCTTGCTTCCACGCTCAGGGGTGCGACTCCGACTAGGCGATCGGGAGCGGGAGCTGCTCCTGCTGCGGGAACGGCTTCTACTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138649 lncRNA upstream 36632 14090525 ~ 14091232 (+) True G93685
TU138606 lncRNA upstream 177259 13945330 ~ 13950605 (+) True G93659
TU138684 lncRNA downstream 24071 14185391 ~ 14188993 (+) True gmfb
TU138706 lncRNA downstream 63663 14224983 ~ 14227711 (+) True G93723
TU138719 lncRNA downstream 82088 14243408 ~ 14245542 (+) True G93733
TU138722 lncRNA downstream 87445 14248765 ~ 14249522 (+) True G93736
TU138733 lncRNA downstream 115295 14276615 ~ 14276875 (+) True G93743
XM_043255945.1 mRNA upstream 111994 14012249 ~ 14015870 (+) True LOC122356869
XM_043255518.1 mRNA upstream 190995 13930623 ~ 13936869 (+) False si:ch211-67f13.7
XM_043255517.1 mRNA upstream 190995 13930625 ~ 13936869 (+) True si:ch211-67f13.7
XM_043255519.1 mRNA upstream 190995 13931018 ~ 13936869 (+) False si:ch211-67f13.7
XM_043255521.1 mRNA upstream 198627 13918443 ~ 13929237 (+) True mfsd2aa
XM_043255298.1 mRNA downstream 23995 14185315 ~ 14188380 (+) False gmfb
XM_043255297.1 mRNA downstream 29862 14191182 ~ 14196252 (+) True cnih1
XM_043255289.1 mRNA downstream 39530 14200850 ~ 14209385 (+) True LOC122356518
XM_043255290.1 mRNA downstream 39530 14200850 ~ 14209385 (+) False LOC122356518
XM_043256285.1 mRNA downstream 71054 14232374 ~ 14236033 (+) True dmac2l
TU138522 other upstream 218261 13739607 ~ 13909603 (+) True G93613
XR_006252431.1 other upstream 911107 13216658 ~ 13216757 (+) True LOC122357146
XR_006252318.1 other upstream 1539011 12586886 ~ 12588853 (+) False mgme1
TU138047 other upstream 1552652 12571631 ~ 12575212 (+) True G93296
TU137635 other upstream 2523640 11603697 ~ 11604224 (+) False G92977
XR_006252357.1 other downstream 192796 14354116 ~ 14367135 (+) False frmd6
XR_006252421.1 other downstream 945138 15106458 ~ 15226183 (+) True LOC122357077
XR_006252370.1 other downstream 1093754 15255074 ~ 15275234 (+) False fam135a
XR_006252400.1 other downstream 1134529 15295849 ~ 15314279 (+) False tarbp1
XR_006252368.1 other downstream 1703519 15864839 ~ 15870625 (+) False hps1

Expression Profile