RNA id: TU138574



Basic Information


Item Value
RNA id TU138574
length 374
lncRNA type read_through
GC content 0.31
exon number 2
gene id G93643
representative True

Chromosome Information


Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 13761052 ~ 13930287 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


gcctatatgtgtatacatgtaaCAGAATTacgtaatttaattacaaaatgtaactgCAATCTTATTCTAaccttaatataaaaaaaaaatatgtaaataacgTTAACGATTACAAATGGGGTTACATTTGAGTATTTTTACACAGATCTGATTTATTCTGATCTGATCCTAAATTCCGGTGACTGCtctaaaacaactaaattgACGTTCGGTGTAAGTGGCAATACTGTGTGTAGTTCAGATTATCAGACGGGACAGGACCACTGGAAAGTgttgtaaaaatgcaaatgttttttttttttttggtaacaaagctgcctgtatttatgcattttgtatCGCATTACTTGTCacaaaataaacgtttaaatATG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU138576 lncRNA upstream 318 13759556 ~ 13760734 (+) False LOC122356417
TU138376 lncRNA upstream 413014 13346861 ~ 13348038 (+) True G93512
TU138346 lncRNA upstream 569257 13187585 ~ 13191795 (+) True G93485
TU138317 lncRNA upstream 596739 13164037 ~ 13164313 (+) True G93474
TU138293 lncRNA upstream 602614 13156930 ~ 13158438 (+) False tasp1
TU138606 lncRNA downstream 15043 13945330 ~ 13950605 (+) True G93659
TU138607 lncRNA downstream 15043 13945330 ~ 13950605 (+) False G93659
TU138598 lncRNA downstream 15890 13946177 ~ 13950605 (+) False G93659
TU138603 lncRNA downstream 15890 13946177 ~ 13950605 (+) False G93659
TU138604 lncRNA downstream 15890 13946177 ~ 13950605 (+) False G93659
XM_043255096.1 mRNA upstream 630 13749135 ~ 13760422 (+) True LOC122356417
XM_043255085.1 mRNA upstream 34028 13721418 ~ 13727024 (+) True kcnk1b
XM_043255897.1 mRNA upstream 68703 13686039 ~ 13692349 (+) True agpat4
XM_043255059.1 mRNA upstream 82420 13675767 ~ 13678632 (+) False gpr75
XM_043255060.1 mRNA upstream 82420 13676026 ~ 13678632 (+) True gpr75
XM_043255518.1 mRNA downstream 336 13930623 ~ 13936869 (+) False si:ch211-67f13.7
XM_043255517.1 mRNA downstream 338 13930625 ~ 13936869 (+) True si:ch211-67f13.7
XM_043255519.1 mRNA downstream 731 13931018 ~ 13936869 (+) False si:ch211-67f13.7
XM_043255945.1 mRNA downstream 81962 14012249 ~ 14015870 (+) True LOC122356869
XM_043255298.1 mRNA downstream 255028 14185315 ~ 14188380 (+) False gmfb
XR_006252431.1 other upstream 544295 13216658 ~ 13216757 (+) True LOC122357146
XR_006252318.1 other upstream 1172199 12586886 ~ 12588853 (+) False mgme1
TU138047 other upstream 1185840 12571631 ~ 12575212 (+) True G93296
TU137630 other upstream 2156200 11603697 ~ 11604852 (+) True G92977
XR_006252357.1 other downstream 423829 14354116 ~ 14367135 (+) False frmd6
XR_006252421.1 other downstream 1176171 15106458 ~ 15226183 (+) True LOC122357077
XR_006252370.1 other downstream 1324787 15255074 ~ 15275234 (+) False fam135a
XR_006252400.1 other downstream 1365562 15295849 ~ 15314279 (+) False tarbp1
XR_006252368.1 other downstream 1934552 15864839 ~ 15870625 (+) False hps1

Expression Profile