RNA id: XM_043255096.1


Basic Information

Item Value
RNA id XM_043255096.1
length 2276
RNA type mRNA
GC content 0.46
exon number 15
gene id LOC122356417
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 13749135 ~ 13760734 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGgcgggggggaaaaaaagcgcGTGGGCGTGGACACGAACACTTCAGCGTTCAAACGAGGTAGGAGTGGAGATCAGCATCTCGTTTTCTTCCTGAGAGCAGCACTTTGTCAAGCGGTGTTGCTTAACTTGAACACAAGAATAAAGCAGCTCAATCCGCTCCTGAAATAAAACACCCCTGATTAGTGTTATGGCAAGAGGAGAGGGAGCCGAACAGTTCTCATCCGGTTTGTTACATACAGCCAAAACTGCGAATCAAGATGGAATCAAAATTGTTAAGCTTCCCCCACAGCAGGAGAGGAAAAGAGCTCTGACTGTGTGGAGCAAGGTGTGTTTTGCAATCGGAGGGGCTCCGTATCAGATCACAGCCACCGCCCTGGGCTTCTTTCTGCAAATGTTTTTGCTTGATGTGGCACTGGTGAGCCCCCTCAATGCTTCTGTGATCCTGTTTGTGGGTCGAGCCTGGGATGCCGTGACTGATCCTACAGTTGGGTTTTTCGTAAGCAGAAGCCCATGGACACGGCACGGACGTATGATGCCCTGGATTCTGTTGTCGACCATACCAGCTGTGTTGTGTTATATCCTAATATGGGTAGTTCCACCTATAGAGCAGGGAAAGATGATGTGGTATCTGCTCTTCTACTGTCTCTTCCAGACTCTCCAGACATGCTTTCATGTGCCTTACTCCTCTCTGACCATGTTTATCAGCAACAAACAGCAGGAACGAGATTCAGCTACAGCGTACCgCATGACTGTAGAGGTGTTGGGTACAGTAATTGGCACTGGCGTTCAGGGGCAGATTGTAGGCATGGCCAACACCCCCTGCATTAACGACACATCAGTGACCAACAGCTACAACAACTCTGTGCATGACAATATTACTCAGGTCTTACTGGATAAAGTATTTAAAGAGAGGCGTGCATATGTGTTTGCATCTGTAGTCATAAGTTTGATCTACATCCTGTGTGCTGTTGTGCTGTTCTTAGGAGTGAGAGAGCAGGACAATCAGGGAGGTTTAAAAGCACAGAAGCGTGTGTCATTTCAGACCGGTTTGAGGCTGGTGATGGGTCATGGGCCATATGTTAAACTGGTGCTGGCTTTCCTATTCACTTCATTGGCCTTCATGCTGCTGGAGGGAAATTTTGCCGTGTTTATCAAGTACACGCTGGGATTCAGAGAGGATTTTCAGAACATCTTACTGGTCATCATGCTGTCTGCGGCTCTTACCATTCCCCTGTGGCAGTGGTTTCTCTGCAGGTTTGGCAAAAAGACTGCTGTGTACATTGGCATACCGtggGCAGTGCCATTCATGATCCTCGTGGTGTGTGTAAAGAGTAGTCTCCTCGTGTCCTATATTGTATCAGTCGCTGCTGGTGCTAGTGTGGCAGCGGCCTTCCTTCTGCCCTGGTCCATGCTTCCAGATGTTGTAGATGATTTTAAAGTCCAGAATCCCACGTCTCAAGGCCATGAAGCTATTTTCTACtctttctatgttttttttactaaattcgCCTCTGGTGTGTCAGCTTGCGTATCAACACTAGCATTAAGCTTTGCGGGTTATGTAACGAGGGGTTGTGTTCAGCCTGATTCTGTGCATCTGACGTTGAAGATTCTGGTGTCTGCTGCTCCTGTTTCACTTATAGCACTGGGGCTTCTTATCTTTAAAACCTATCCCATTAATGAAGAACGCAGGCAGTACAACAACAAACAGCTGCAGCTGCTACTGCGGAACGAAGAACAAGAGTCGGAGATGGAGGCCTTGAAGCCTGACCTCACAGCCTGAAGCATCAGCTCTGACCTACAGAGGGCGCCAAAATACACCTTTACCACTGCAATGAGGAAATCAGCTGGACTTTCCTCACTCAGTTGGTTAACCGGACCAATGAAGGATGACGAACCTTAAAGAAAATCTGCACTACTGTTATCAAAGCTACATATGTATACAACAAACTAACTACAATATCCTGCTTGCTGCTTTCAGTTACAATTACATCTCTCCCTGAGAGAGAACAAAGGGAGATTTTTATGATTAATATGAGGTTCAAATCTACCATCTACCAATATATCGTATTTTGTTGCATCTCTTTGTTCATTTGAGATGATGGATTCATATATTTTGGTTTCTGAATGTTGAGGATGTGTTGAGGTGCATTTGTTTGAGGACATGTTTTCTCATTGTGGTGAAGAATTGTTGGCTTGTTTTTGCACTTGGGGTGAAAATATTTGAAGGGACAGGATTTTTTTCCCCGTTTCTTTAAAGGTGACGTGAAATCAT

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K03292 TC.GPH; glycoside/pentoside/hexuronide:cation symporter, GPH family

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138376 lncRNA upstream 401097 13346861 ~ 13348038 (+) True G93512
TU138346 lncRNA upstream 557340 13187585 ~ 13191795 (+) True G93485
TU138317 lncRNA upstream 584822 13164037 ~ 13164313 (+) True G93474
TU138293 lncRNA upstream 590697 13156930 ~ 13158438 (+) False tasp1
TU138058 lncRNA upstream 1146594 12602191 ~ 12602541 (+) True G93306
TU138574 lncRNA downstream 630 13761052 ~ 13930287 (+) True G93643
TU138585 lncRNA downstream 101629 13862051 ~ 13862660 (+) True G93649
TU138606 lncRNA downstream 184908 13945330 ~ 13950605 (+) True G93659
TU138607 lncRNA downstream 184908 13945330 ~ 13950605 (+) False G93659
TU138598 lncRNA downstream 185755 13946177 ~ 13950605 (+) False G93659
XM_043255085.1 mRNA upstream 22111 13721418 ~ 13727024 (+) True kcnk1b
XM_043255897.1 mRNA upstream 56786 13686039 ~ 13692349 (+) True agpat4
XM_043255059.1 mRNA upstream 70503 13675767 ~ 13678632 (+) False gpr75
XM_043255060.1 mRNA upstream 70503 13676026 ~ 13678632 (+) True gpr75
XM_043255040.1 mRNA upstream 74087 13650908 ~ 13675048 (+) False psme4a
XM_043255899.1 mRNA downstream 38489 13798911 ~ 13801239 (+) True LOC122356827
XM_043255076.1 mRNA downstream 92165 13852587 ~ 13858805 (+) True LOC122356401
XM_043255075.1 mRNA downstream 92172 13852594 ~ 13858805 (+) False LOC122356401
XM_043255520.1 mRNA downstream 157776 13918198 ~ 13929237 (+) False mfsd2aa
XM_043255521.1 mRNA downstream 158021 13918443 ~ 13929237 (+) True mfsd2aa
XR_006252431.1 other upstream 532378 13216658 ~ 13216757 (+) True LOC122357146
XR_006252318.1 other upstream 1160282 12586886 ~ 12588853 (+) False mgme1
TU138047 other upstream 1173923 12571631 ~ 12575212 (+) True G93296
TU137630 other upstream 2144283 11603697 ~ 11604852 (+) True G92977
XR_006252357.1 other downstream 593694 14354116 ~ 14367135 (+) False frmd6
XR_006252421.1 other downstream 1346036 15106458 ~ 15226183 (+) True LOC122357077
XR_006252370.1 other downstream 1494652 15255074 ~ 15275234 (+) False fam135a
XR_006252400.1 other downstream 1535427 15295849 ~ 15314279 (+) False tarbp1
XR_006252368.1 other downstream 2104417 15864839 ~ 15870625 (+) False hps1

Expression Profile