RNA id: TU138585



Basic Information


Item Value
RNA id TU138585
length 428
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G93649
representative True

Chromosome Information


Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 13862051 ~ 13862660 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TCCCAGTGTGCTGTTCACCTCTCCAGGCATCGTCTGAGCATTGTTCTTCAGCTTCACCGAGCAGCCGAAGTCGCCAAGCTTTATCAAGCCCGACGACGTGAGGAAGATGAGCACCTTTAATGTCACGGTGAACAATGCCGTGTTCGTGGAGCACGTTGATTGCCGTGGTGATCTGCTTGCTGTAGAGACGGATCACATGCTCCTGCAGACCCAGTCTAGACACTTCCTCCAGGGTCCCTTCATCACAGTACTCCATAAAGATATACATCTCTTCCTGCAACAGCGAAGGTGGAACAATGAGGAATAAAAGCACAGAAGAGACATATAACACAAAGACGCAAAGCTTTTTACCCTGTGCAACTCGACACCAAAGTAGCGGACAAGGTTGGGATGTTTGATTCCTTCAAAGATCTTTAGCTCGTCCGCCG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU138576 lncRNA upstream 101317 13759556 ~ 13760734 (+) False LOC122356417
TU138376 lncRNA upstream 514013 13346861 ~ 13348038 (+) True G93512
TU138346 lncRNA upstream 670256 13187585 ~ 13191795 (+) True G93485
TU138317 lncRNA upstream 697738 13164037 ~ 13164313 (+) True G93474
TU138293 lncRNA upstream 703613 13156930 ~ 13158438 (+) False tasp1
TU138606 lncRNA downstream 82670 13945330 ~ 13950605 (+) True G93659
TU138607 lncRNA downstream 82670 13945330 ~ 13950605 (+) False G93659
TU138598 lncRNA downstream 83517 13946177 ~ 13950605 (+) False G93659
TU138603 lncRNA downstream 83517 13946177 ~ 13950605 (+) False G93659
TU138604 lncRNA downstream 83517 13946177 ~ 13950605 (+) False G93659
XM_043255076.1 mRNA upstream 3246 13852587 ~ 13858805 (+) True LOC122356401
XM_043255075.1 mRNA upstream 3246 13852594 ~ 13858805 (+) False LOC122356401
XM_043255899.1 mRNA upstream 60812 13798911 ~ 13801239 (+) True LOC122356827
XM_043255096.1 mRNA upstream 101629 13749135 ~ 13760422 (+) True LOC122356417
XM_043255085.1 mRNA upstream 135027 13721418 ~ 13727024 (+) True kcnk1b
XM_043255520.1 mRNA downstream 55538 13918198 ~ 13929237 (+) False mfsd2aa
XM_043255521.1 mRNA downstream 55783 13918443 ~ 13929237 (+) True mfsd2aa
XM_043255518.1 mRNA downstream 67963 13930623 ~ 13936869 (+) False si:ch211-67f13.7
XM_043255517.1 mRNA downstream 67965 13930625 ~ 13936869 (+) True si:ch211-67f13.7
XM_043255519.1 mRNA downstream 68358 13931018 ~ 13936869 (+) False si:ch211-67f13.7
XR_006252431.1 other upstream 645294 13216658 ~ 13216757 (+) True LOC122357146
XR_006252318.1 other upstream 1273198 12586886 ~ 12588853 (+) False mgme1
TU138047 other upstream 1286839 12571631 ~ 12575212 (+) True G93296
TU137630 other upstream 2257199 11603697 ~ 11604852 (+) True G92977
XR_006252357.1 other downstream 491456 14354116 ~ 14367135 (+) False frmd6
XR_006252421.1 other downstream 1243798 15106458 ~ 15226183 (+) True LOC122357077
XR_006252370.1 other downstream 1392414 15255074 ~ 15275234 (+) False fam135a
XR_006252400.1 other downstream 1433189 15295849 ~ 15314279 (+) False tarbp1
XR_006252368.1 other downstream 2002179 15864839 ~ 15870625 (+) False hps1

Expression Profile