RNA id: TU138607


Basic Information

Item Value
RNA id TU138607
length 5084
lncRNA type inter_gene
GC content 0.41
exon number 4
gene id G93659
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 13945330 ~ 13950605 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tAAAAGGAGCTAATGaaatttatttaacttaatattcTTATTAGTAGACATCTAATAAATAGCCTCcagcaatttttaatttttttattattattattattattaaagtctACAGTAAGGTTGAAATGTCAGTCCATGGTATTCAGAGAACTATTCAATGAgttgttttgtaataaacattccTTCAACTTTATTAGTATCTTTGATTTACCAAATTTaccaaaaagataaaaaacaatatatttaagaGTCTGCATAATAGGCTTACTATATATAgccatatataatatacacacagtcTTTCACAGGCATATCAACTGTACAGTGACACATGATTTTGGataactgttttaaaacatttgtgcatttctcATGTTCTgctatatttttgttctttttatgcCCTACTTCCCCGTTTGCTTGTTTGACCCTATTATCTGAAGACTGACCTGCAGTGTTATTTCTTCTGTGTGACAGATTGAAGTTTGTAAACTGCTGCTGTCACTTAAAAAAAGTGGAAATACCCAAACCCCCCCAAAAAGCAGACACAGAGATGGGGCAATGCAGCTATGAAAAGATTGCTCTCTCATCTCTTCCTTTTGATAGATTTTATATCTATCAAAGTGAACTCAATACATGTGATACCTGTGACTGTAAAGCAGTCAGTgttctttattttgaattatgtataatgtttatatattgcagcatctaataataaaaaaaaacatagccaGACCAAAAAAAGTCACCATGAAGCTACTTTAGTAACTGTTGTACACTTTTACTTTCATCACATgatgaaacaatattttttttaacaattattatatgtaaataaagcatttcttcttaaaaagagaTTATAATCAGAGACGTAGATTTCTGAAATCAAAGGAacgataataaaaatgtcagtatAGTGCATAAGAaaattttcatatattaaaaacattctttttcttttatttgtagGTTGTAGCAGACTGTAATGTACATCAGCTATGTAAACTAATGAACTTCTctgtgaaaatacaaaaaaataaaccaaaagtAATGATAACACAGAGATTAACACCTTAGACCTCTTGTTTATGGTTTCATAACTTCCGACCACCTTCTTGGCCCTACTTGCACAAAATCGTGAGAAACGGCTTTTGTTTCAATCATCGGCTCCATCCTTCCATTTCATTTATACTTGCTTAGATTCCTTCTCCACATTCTTATATAAGTGTAACTTGGGGTGGGGAATGTGTACAATCACCTTTActgaattgttgttttaaaattttaaacaaatcttgGTTAAACCTTGCaaatggaaaacagaaaaagtcaCAAACCCCACCCCAAAATCAGTGGTCCATTCTCCTAACTGTTCAACCTTACATTCTTTACCTTCGTTTCCTTTCACACTGCTCTCATATTCAGGTATACATTAAAGCCTGTAAAAATCCACCAGAGATTAATTGGTCCTGCCATGTTTACCATAGTTTTTACAGTGCTACCAGCAGGGAGGAGTTCTACAAACTGGAAAGTGTCATGGCTTCTGTCTAAGACAGAggacacataaataaaataagaatatttataatttccAAATACCAGTGACTTGCATTGCCATGATGAATGAGAATCACTTACACTAAACCAGTGTACAAAAAGTGCAATATGCCTATCTGtactttttttggttattttatatttcaaaattaagCAGTTTGGGCCTAAGATTTAAACCCTAGGTTATCtgcaaattaaagcaaaaactcAACGGTTATTAAATCATTTGTgcacatattcattcatttgttttctcaGAGTTCTCGGTCTGTACGTCCTGTCCGGCAGTTAGTACAGTCTCTGTTTGCACATGCTCAGTCTTGGCTACAGACTGGTCCTCTGCAGAGTTCTGAGCAACGCTCTCAACCTTAGCATTGGGTTTCTTAGCAATTGGTGGAGGAACTTTGTTTGCTGTCTTGTGCAAGTCATTAGACTTTGCTGAATCAGAGACACATGCTAACTCTGCCACCAGAGTTTTCCTCAGGTCAGCCTGAACCTCTAAGGATGACGGTGTCTGTATTATTACTTTCTTTGGGCTTTTGGAGAAGATAAAGCTGGCCATAGATGCCGGGGAGTTTGGTACAGTGGTGCCATTAGCTGTGGCTGGGGGAGGTGAGCGAAGACCAAAACGTTTGGCTTGGTTGTCTTTTGAAGACATAGCAGCCGCCTTTAGACGAATGGCTTCCTGAAGACGCATGGAGGGGTTCGCTGGTGAAGAGACTATGGGAGGTGTGGATGAGACAACGGGTGTCAGTGTTTGGGTTTTTGGCTGCTCACCCTCTGGCTTTGAGTAATTTTCAACAGTACTTAATTGCTTCTCTGAATTAAGCATGGTCTTGTTGGGTTCTTGTGCTTGATGTTGAGGCTTTGGCGCATTGATTGATTGGTCCTTTGGTCCTGTTGTACTTGGCAGAGTTTCTGGGTCATGCATTGTAGatttaatttgttcttttaGGGTTTGAGGTGTGGGTTCTGTTTCTGGACTGGCTGTTTTAGTTGCTGGTTCAGGAGTAACTGGATTCTTACTTGGTTCCGTAGCTGGACATGTAGCTGATGAGCATTTTGGCTCAAGTTGAGCAATGTTATTTGATTGAGTTTCTGGCTTAGATGATCCTTGCTGAGTATTTGATACAGTGACTGCATTTGTGTTGATGGACGGAGCTTCAGTGTTTGTGTTGGCAAGAGCTTCCACATCAGGGGGAAGTGATGTCAAAATTAAAGATTGTCTGATTGGCTTTGGAGGTGCCTCTTGATTGACACCTGATTTTGGTTTGGGTTGTGATGGTTTATCAGGATCTACAGTAGTGCTCGGACTGGTCTTAACCGACCTAAGACGAACCATCTGTAGGAGAGACTGAGTGACCACAGGACCGGATGCGTCCTCTTTGGCTAGAGAGGGACTGCTTGTTCgtttctctgtttctgtcttctCTAGTCTGTCCTCCATTTTTACATTACTAGGTAGTGGAGGAGTAGAAACAGTGACTTGAGATCTTACATCAGTGGGTaatggaggaggtggaggaacAGTGACTTGAGATCTTACATCAGTGGGCactggaggagGTGGAGGTACACTGACTTGAGATCTTACATCAGTGGGCactggaggaggtggaggaacACTGACTTGAGATCTTACATCAGTGGGCactggaggaggtggaggaatGTTAATTTGTTGATAAGTTTTAGAGGATGTTACTAACACATTTTGTGTTGAAGGTTTGGATTCTTGTGGAAGGGATGAGGTATTCTGTGGTTCAGAAGGTGGTCTTGGTGGAGATGGAACTTCTTGCAGTGGTGGTGGTGGAATATCTGGTGGTAGTTGAGGCATTGTCAGTAAAGACTGTGGTGAAAACGGTGGGGGCGGTGAAGGGAGATCAGTATCATTTTGCACAATGACAGGAGTTGCTGTAGTCGTACCTGCTGGAGGTGCTGGAGGAGGAAACAAAGGAGGTGGAGGGATCCAAGAAGTCAAATCCTTTATTGCTTTGGCAGCTAGTGTAGGAGTTGAGGGAACAAAGTCCGGAGGGGGCGGAGGAGGTTTGGCTTGGCTGTTGTTTGGTATTGGTGGGCAATGCTCTGGGGGAGGCGATGGAGATGGGGCAACATAGACAAGTGGTGCTTTAGATTCAACTTTGCCTTTTATCTCTACTGGCTGCGATAGAGGTATCAACGCCACATCTGGTTCATCTGCAATTTTAAGTCCTCTCTTTTTGGCCCAACGTGCATAGTTAACAGGTCCAGGGCCACACAGCAGTTCAAAAGTCCGCTGGTTGTGAGCCCAGGTCTCAGGAGGAGGAGCTGGTGGAGCCAGGACTTTAGGATGGTTGGGAATCTCAAGCAGAGACAAAAGGGCCATTACAGCTGGTGATGAATTGTTACCATTGATTCGATTTTTTGCAGACAGAAGGGTGTTCTTAAGTTCAGCAAGCTTACTGGTGCCATTTATGTATGATTGGGGAGCGCCAGTGGAAGACActtgaaggttttttttgtgtatattttgctCAGCTAACATTGATTTCTTATCTGTGCTGACTGTTTGGTTCTCCTTTAATGGGAAAGATGTGGGTCCATTCGAGGCAGGTATCTTAGGGCTCAACTTGTGAGTGGTGGCCTTCATGACAAGAGGGTATGGTGATCCATCTGGAATGTTGACATCATCCATGTAGGTAGGACTCTCAGATTTCTTCCAAGTCTGTTTCCCATTGTGTAAAGAGTATGACCTGCTGGGAGGAGCTGGAGGTTTCTTGCCCCGTTTAATCACTGATAGGTTACGTGTGAAAGCATCAGCAGATTTCATTTTTCCACTGTCTTCCTCCTCGGTAGAGCCACCATTCACACGAGCAGTTTTAACATGGGAACCGTGGTTGTTCAGATTGGCTGGTTTACTCCTGTTCTCAACCTGACTCCCTCTGCTGGCCACACGGGGAGTGCTACTGCTGGAGATGGTAGAAGAATCAGATACAAGTGTTTCTGATGATCCCGAGTGGGTCCATCCAGAGTAGTTTGAGCGAGTTGTGGAACAACGTGAAGAGACTCTGGAAGAAGCACGTGTGGATGCTGGACTGGCTGATACAAGGCTGCTCTTGCTGACGGTTCGTACACTGCTGCGACTTCTGTTGCGACTGAGCTCTACGACATCCACAGACGGTGGAAGTACAGCATTTGGAATGATTTTAGACATGTATGTGGCCTGAGGTGAGATGGACATCACTGTACCAGTTGGGTTCTCTGACAAAGGAACACCTAGAACACCTGACTTTTCTGGATTTAAAGAATAACTCATGAGCCCTTGGAGAATATCATCTTTAGGTTTTGTCAGTGTGGGGAGCTCCTTGTTGTCTTTCTTAACTGTGTACAGGTTCTGTATTCCCTGTAGATGGTCTTGTACACTTTCTTGTTCAGAACTGGAAGATGTGTCATCCACAGTGGAAATTATGGCAGGTATGATCATATCTCCATTAAACAGCTGACCATCAAGAGGTTTTGTGGTGATCCATGCTGCTCTGTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138574 lncRNA upstream 15043 13761052 ~ 13930287 (+) True G93643
TU138585 lncRNA upstream 82670 13862051 ~ 13862660 (+) True G93649
TU138576 lncRNA upstream 184596 13759556 ~ 13760734 (+) False LOC122356417
TU138376 lncRNA upstream 597292 13346861 ~ 13348038 (+) True G93512
TU138346 lncRNA upstream 753535 13187585 ~ 13191795 (+) True G93485
TU138492 lncRNA downstream 80777 14031382 ~ 14161320 (+) False G93592
TU138494 lncRNA downstream 80777 14031382 ~ 14130370 (+) True G93592
TU138649 lncRNA downstream 139920 14090525 ~ 14091232 (+) True G93685
TU138490 lncRNA downstream 177259 14127864 ~ 14161320 (+) False G93592
TU138684 lncRNA downstream 234786 14185391 ~ 14188993 (+) True gmfb
XM_043255518.1 mRNA upstream 8461 13930623 ~ 13936869 (+) False si:ch211-67f13.7
XM_043255517.1 mRNA upstream 8461 13930625 ~ 13936869 (+) True si:ch211-67f13.7
XM_043255519.1 mRNA upstream 8461 13931018 ~ 13936869 (+) False si:ch211-67f13.7
XM_043255520.1 mRNA upstream 16093 13918198 ~ 13929237 (+) False mfsd2aa
XM_043255945.1 mRNA downstream 61644 14012249 ~ 14015870 (+) True LOC122356869
XM_043255298.1 mRNA downstream 234710 14185315 ~ 14188380 (+) False gmfb
XM_043255297.1 mRNA downstream 240577 14191182 ~ 14196252 (+) True cnih1
XM_043255289.1 mRNA downstream 250245 14200850 ~ 14209385 (+) True LOC122356518
XM_043255290.1 mRNA downstream 250245 14200850 ~ 14209385 (+) False LOC122356518
TU138522 other upstream 35727 13739607 ~ 13909603 (+) True G93613
XR_006252431.1 other upstream 728573 13216658 ~ 13216757 (+) True LOC122357146
XR_006252318.1 other upstream 1356477 12586886 ~ 12588853 (+) False mgme1
TU138047 other upstream 1370118 12571631 ~ 12575212 (+) True G93296
TU137635 other upstream 2341106 11603697 ~ 11604224 (+) False G92977
XR_006252357.1 other downstream 403511 14354116 ~ 14367135 (+) False frmd6
XR_006252421.1 other downstream 1155853 15106458 ~ 15226183 (+) True LOC122357077
XR_006252370.1 other downstream 1304469 15255074 ~ 15275234 (+) False fam135a
XR_006252400.1 other downstream 1345244 15295849 ~ 15314279 (+) False tarbp1
XR_006252368.1 other downstream 1914234 15864839 ~ 15870625 (+) False hps1