RNA id: TU138684


Basic Information

Item Value
RNA id TU138684
length 1888
lncRNA type sense_over
GC content 0.40
exon number 6
gene id gmfb
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 14185315 ~ 14188993 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCGAGCGTCACGAGACGCGGCACGGTAGAACTCCTGCACTGCTGAGCTCGTGCCGTCTGTGAAAATGagtgAGTCTTTAGTTGTGTGTGAGGTGGATGAAGACCTGGTGAAAAAGTTGCGTGATTTCCGCTTCAGGAAGGAGACTAATAATGCTGCAATCATCATGAAGATTGATAAAGACAAACAGCTGGTGATTCTGGAGGAGGAGCATGAGGATATTTCCCCAGAAGATCTGAAGAACGAGCTACCAGAAAGACAGCCCAGATATCCTTCACTAAAACTAAATTCGCTCTGTgctgttttgtgatttttaaacaaTCAATGGATTCCTTAACCTGTGACACATTTGTAGTCTACAGCTATAAGTACCAGCACGATGATGGGAGAGTGTCCTACCCTTTGTGTTTCATCTTCTCCAGTCCTGTTgGATGCAAACCTGAGCAGCAGATGATGTACGCTGGCAGCAAAAACAAACTGGTACAGACGGTTGAACTGACCAAGGTGTTTGAGATCAGGAACACTGAAGACCTGACTGAGGAGTGGCTCCGAGAGAAACTGGGCTTCTTCCGCTAAGAAAGGACCGAAAAAGCTAACAGTCATGTTTAAAGAGTGACCGAGATGGGACCATCACCTCCAAACGGAGAGAATACCATAGTCCATCTGATAATgtctgtttgtgtatgtttgaatGCTTCTGCCCAAACTCTAAACCCGCCTGTACCAGTTTAAGATGACAGAAATTTGAggtgcaaagaaaagaaaatgtgaaagcAAATTCCACATATACACTAAACAATTCcttggatttttaaaatcattccGCCGTCATCCCTAAGCAGTAACGTATGTACCGGCCTGCATAGGTGGTCCAGGCTTACTGCCATGATAGTTGGATGACATGTTGTGATTTTTATGTCAGCTATCCTTCATGATAGATGACACGGCAACAGTTTGAAACATTGTATTACTCTATAATGTGGCATGTTTTGCCAGTTTTGGTATAAAATCATATGGGTCTTCGTGTAAAGCTCTGATGAGGGCCAGACATTTTCTTcctttgtaatgcattttctaACTTGAATTTGACCaaacatgaattattttgttttgatatcTGTTGAACTGTAACGGTAGGTGAAGAGGACAGAAGTCTTACTGATATTTTTGGGAGAAACCGTTTACTTGTCataaattcattctttttttttgccttttttaaatcTGCGCTCACGGCCTGATAAATCTCAACTAAAGATTAAAATCTGTGAAGACAATTGTGTGAAAATTCTGGGACTAATTTTacttgattttgtgtttttgggaGATCATACCTAGATGTCCTCAATCACAGATCTGTCCTACCTTTTTGGAGACGTGTAGGTTTAGATGCGCAGCGGCAGAGATATGCTATGGTGTTATTTTCCCAGAGGCAATCATCTCATAATTAATTCCTCTCTTATTCTAAATTACTCTTTCTCACTGTCCAACTAAACATTGGAATAAAGCCGGTGTCACGATTCTTCAGTTTATGCAAAAGTAtcaacatttctgtatttatgtaaaaaaaaacaatctattGGCAAAATGTAAACACTGGAAACTTCTTAAATGTTCAGAGCTTAACAGAATAATACGAGTAGTTTAAGGAAGTGATGTTATCATGGGATTGATAAGTAATACCTCGGCAGATCTCACATCTTTCAGAATCTGAGCTCTAATGTGGGTCAGGCTCATCTCTGTACATCTGTAGAACTTGTAACACCTGTGATTAGTGCCGTTTCCTACTAAACACTGATTGCTCACTTTGGTGGTTTGTGCGATGTGGACATCACGTGATATGTCCCATACAGTAGTGaactgtgtatgtgtttaacatttaatttttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138492 lncRNA upstream 24071 14031382 ~ 14161320 (+) False G93592
TU138490 lncRNA upstream 24071 14127864 ~ 14161320 (+) False G93592
TU138494 lncRNA upstream 55021 14031382 ~ 14130370 (+) True G93592
TU138649 lncRNA upstream 94159 14090525 ~ 14091232 (+) True G93685
TU138607 lncRNA upstream 234786 13945330 ~ 13950605 (+) False G93659
TU138706 lncRNA downstream 35990 14224983 ~ 14227711 (+) True G93723
TU138719 lncRNA downstream 54415 14243408 ~ 14245542 (+) True G93733
TU138722 lncRNA downstream 59772 14248765 ~ 14249522 (+) True G93736
TU138733 lncRNA downstream 87622 14276615 ~ 14276875 (+) True G93743
TU138738 lncRNA downstream 93776 14282769 ~ 14284777 (+) True G93745
XM_043255945.1 mRNA upstream 169521 14012249 ~ 14015870 (+) True LOC122356869
XM_043255518.1 mRNA upstream 248522 13930623 ~ 13936869 (+) False si:ch211-67f13.7
XM_043255517.1 mRNA upstream 248522 13930625 ~ 13936869 (+) True si:ch211-67f13.7
XM_043255519.1 mRNA upstream 248522 13931018 ~ 13936869 (+) False si:ch211-67f13.7
XM_043255521.1 mRNA upstream 256154 13918443 ~ 13929237 (+) True mfsd2aa
XM_043255297.1 mRNA downstream 2189 14191182 ~ 14196252 (+) True cnih1
XM_043255289.1 mRNA downstream 11857 14200850 ~ 14209385 (+) True LOC122356518
XM_043255290.1 mRNA downstream 11857 14200850 ~ 14209385 (+) False LOC122356518
XM_043256285.1 mRNA downstream 43381 14232374 ~ 14236033 (+) True dmac2l
XM_043256281.1 mRNA downstream 79384 14268377 ~ 14276439 (+) True atl1
TU138522 other upstream 275788 13739607 ~ 13909603 (+) True G93613
XR_006252431.1 other upstream 968634 13216658 ~ 13216757 (+) True LOC122357146
XR_006252318.1 other upstream 1596538 12586886 ~ 12588853 (+) False mgme1
TU138047 other upstream 1610179 12571631 ~ 12575212 (+) True G93296
TU137635 other upstream 2581167 11603697 ~ 11604224 (+) False G92977
XR_006252357.1 other downstream 165123 14354116 ~ 14367135 (+) False frmd6
XR_006252421.1 other downstream 917465 15106458 ~ 15226183 (+) True LOC122357077
XR_006252370.1 other downstream 1066081 15255074 ~ 15275234 (+) False fam135a
XR_006252400.1 other downstream 1106856 15295849 ~ 15314279 (+) False tarbp1
XR_006252368.1 other downstream 1675846 15864839 ~ 15870625 (+) False hps1

Expression Profile