RNA id: TU138706



Basic Information


Item Value
RNA id TU138706
length 816
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id G93723
representative True

Chromosome Information


Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 14224983 ~ 14227711 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


cttttataaaaaaagcatacattttacagttatttcaagatataaaaaattttatgtaaaaatttaaagtacaaacacacacgtttaaTTCAGTTGTTTGTGATTCACCTGacaaaaactaacacacacacacacacaccttctatAAACTCTAGaatccaaaaaatgtaatttacaaaaaGTATCAAGAATCAGATCTTCAAATATTGTTACGGACACTGCTTCTACaatgaacaaatcaaaaaaGTTAACTTCCTTCAGGCATTAGAGGTTAGGTATAATTTGAAGAcccatcaacaaaaaaaaattgtcatgctttatttttataaatgcaggTATGGAGTGAATGCATTCTCTTAAGAAGCAACtgccttttttatgtttttaaggcAGTTATTTTTCCTCATAAATCACCAGGTTTACAAAGACATAGCAACAGTTACCCAACATTCCCTTAAATCTGCACAATTTTCAGAATATACATTAGAAAGGAGCACCAGAAATCTCTTTACATTATTACTGTCCCTCAGCAGTATAAAAGTAAAActtattacataattatttcaTCTTCTGAATTGAAGCACTAGAGTGAGAAAGGTTATGGCAGCATCGTCTGAGGTACGTCTACAGTTGAAATCTTTTCTCCAGTTCATCAGCGATCATTTCAGCGATGGCCAGGGAGGAGCTCGCAGCGGGTGACGGGGCGTTGCGCACATGCAGAATCCGGCTGCCCAGCTCTCCCTTCCCACTGTCAAACACGAAATCATCCACCAGGTTTCCTTCAGCATCCAAAGCCTGCGCGCGCACACCCGAAGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU138684 lncRNA upstream 35990 14185391 ~ 14188993 (+) True gmfb
TU138492 lncRNA upstream 63663 14031382 ~ 14161320 (+) False G93592
TU138490 lncRNA upstream 63663 14127864 ~ 14161320 (+) False G93592
TU138494 lncRNA upstream 94613 14031382 ~ 14130370 (+) True G93592
TU138649 lncRNA upstream 133751 14090525 ~ 14091232 (+) True G93685
TU138719 lncRNA downstream 15697 14243408 ~ 14245542 (+) True G93733
TU138722 lncRNA downstream 21054 14248765 ~ 14249522 (+) True G93736
TU138733 lncRNA downstream 48904 14276615 ~ 14276875 (+) True G93743
TU138738 lncRNA downstream 55058 14282769 ~ 14284777 (+) True G93745
TU138749 lncRNA downstream 79285 14306996 ~ 14308382 (+) True G93755
XM_043255289.1 mRNA upstream 15598 14200850 ~ 14209385 (+) True LOC122356518
XM_043255290.1 mRNA upstream 15598 14200850 ~ 14209385 (+) False LOC122356518
XM_043255297.1 mRNA upstream 28731 14191182 ~ 14196252 (+) True cnih1
XM_043255298.1 mRNA upstream 36603 14185315 ~ 14188380 (+) False gmfb
XM_043255945.1 mRNA upstream 209113 14012249 ~ 14015870 (+) True LOC122356869
XM_043256285.1 mRNA downstream 4663 14232374 ~ 14236033 (+) True dmac2l
XM_043256281.1 mRNA downstream 40666 14268377 ~ 14276439 (+) True atl1
XM_043256249.1 mRNA downstream 112180 14339891 ~ 14344861 (+) True tmx1
XM_043255622.1 mRNA downstream 126404 14354115 ~ 14367244 (+) False frmd6
XM_043255619.1 mRNA downstream 126407 14354118 ~ 14369557 (+) True frmd6
TU138522 other upstream 315380 13739607 ~ 13909603 (+) True G93613
XR_006252431.1 other upstream 1008226 13216658 ~ 13216757 (+) True LOC122357146
XR_006252318.1 other upstream 1636130 12586886 ~ 12588853 (+) False mgme1
TU138047 other upstream 1649771 12571631 ~ 12575212 (+) True G93296
TU137635 other upstream 2620759 11603697 ~ 11604224 (+) False G92977
XR_006252357.1 other downstream 126405 14354116 ~ 14367135 (+) False frmd6
XR_006252421.1 other downstream 878747 15106458 ~ 15226183 (+) True LOC122357077
XR_006252370.1 other downstream 1027363 15255074 ~ 15275234 (+) False fam135a
XR_006252400.1 other downstream 1068138 15295849 ~ 15314279 (+) False tarbp1
XR_006252368.1 other downstream 1637128 15864839 ~ 15870625 (+) False hps1

Expression Profile