RNA id: TU138760


Basic Information

Item Value
RNA id TU138760
length 3205
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G93766
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 14318780 ~ 14322084 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACCGGTTGGTGTGTGAGTTGTTATGCATGAACCAGGAGCGGTTGTTGTCCACATACATGGCCCAGGCTTTATCGTCCTTCCCCAGCATCACGTCCTTCAGGACATCGGCGCGGGCGACTCCAAACGCAGGGTCAGGGTGGTTGTCATAGCGATCGATGGTCATCTCCCAGTAGTGCACGCCACGAGAGAAGCCTGTGTTGCCCATCACAACGCGGTCGTCGTAACTGTTACACGTCACCGTGAGGTTGTCATTGGACAAGATGATGTCAGGGTGGGCCGACGCAGGGTCAAAGGTAAACCAGGCAACTGCAgaaacagcacacacatacacacacgtacagtcATGAAGGCTGCTTGAGCTTGATTTAGAGTAAGAATTAAAGTCCAGATGAGTTTAAGAACACAGAGACACTGCAAATCAAACTTGCAAACACGCACTGAATCTttcactcacatacacacgcactctcacacacacaaacaaacaaacatattcaAGCAGACAAGAAAGAGTCTATGAGGTTAACTTAATGATGATGTTCAGACATTCATACCTGCTGCCAGAGTTTTACTACCATATGAAGGCAGACTCACTGAAATCAAGAGAAAGAGGGGAAAAGAGCGAGAGAAGGTTGGAGAGATAAAGAAAAGTGGATAAGGCAGAGAAATGCAGAGGACAGAAAATGCAGAGGGGtggaaggagagaaaaaaaagaaagtaacaGAATTGGGTACTGAAAGAGAGGAAGGAAAGCAGCAGATCAGGGAAGCTGGACTTATTCAGCGCTTACAAGTGATAAAATACTATAGAGCGTTAGTACAGTTAACAGCACAATGATGTTCAGTTATATTAGTAACATACAATTAGACACACAATGGTGTTAAACCTCCACAGCAGACTTTCAGTGTGACGTCACTGGCACTTTCCATTAATAGGGTACAAAAAAgagggtgatttttttttcattaaatgtttaatgctcAAATTTCAGGaggtcaaactaaatattataatattgattttctatttattttaaacgatGACTTTGCAACAATGTGTGCAATTTGCATTAAGTTGTAAAGTCTAACATGTTAAAATAGTcagaaaaatgcaatgtaagaatataataaaaatataatactataatataatataaaattaaattgattctTTTTAGAAATCCTATACATGTAGGTGATGATATTTATATGGaaaaatgttagatttttttgtgacaCTATTTTGACATTACTAAAAAAAGTCTGCTGTATTATTTTGCACTGACATGCTCAAGCTTCCCTGTGGATTAAGAGTGACAGCAGTCAAAAgtaagttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcaacagTGAGGTGGCATCTCTTACTCTCTGATGTCTGCATGACAAGCGTTTTGCTGTACTGGCCGACTCCACTGGAGTTAAACGCTTTAACACGTGATTTGTAAGTGCTGTTGAAGTGCAGACCATCCACTGTGCAGATCATCTCTATGCCAACATACACCTCCTGCAAAATACACACTTCAGTTAGTAAGCACACAAGGTTATcaatctgtgtttttaatggACATTTATGATACTGCCTACTTTATATTGCACATTATATGCTGCAAACTACATTCTTAAACAAAATACATGACACAGTATACGTTTTATGTTTGAAATTTGTTCAGCTGGCAAACATTACTGTTGTAAATAGCATTATGACAAACAAACTCTATGAAAGTCTAAAGTCTATGGCTAGAATCTGAATAAAGTACTACCATACTATTCTTACTATTACTGTAGTGAAAATAGCGTGCTACATCAAATTCACGTACTTTTCAAAACACACTTATTTACATCAAAATGTGGACAAACTGTATGCAGAAATAGTAGAATGTATATACtatgtttactgtatttctgcATGTAGCAGACATATTTTACATAGTATGTACATTTTCTATATGCTGATGAATATCTTGGGAAAAACACAATGATACCGTTGCTAAAAATCTACCCGAAAATGGAGCAAATATGAGAACACATGAACCTGGCTTTCTAAAATAAGAGCTTGGCCTGTTTAGAGGAtagttaagtgtgtgtgtgtaggttacaatgtgtgtgtctgagtgtatTTCAATggtaatgtgtaaatgtgagtgtgtatgtgtggctATATATGGTATAAGTGTATTAGTTTAATCTCATGGGGTTGATTTCAGATCATAACACTCAAGTCAAATCATTACTCAATGTTCTATTCTTCTGAACTGTCTTATTACTAAAAAGTgcttcacacaaaaatattaaacagcataacatacaatttttttaatatatttaaataagaaaagttatttgaaattgtaataaaatcaaataaatatttttaatcaaataaatgcagccttgatgagtaCAATAAACCTCCTGTAAAACACTTTATATGCTAGTCAcatgaaatgtaattacaagCGACCATTTGTGATGTAAAGAGTAAACAGTGAGTGAcagaggttgtgtgtgtgtgcatgcatgcatttgtgatCGTATAAGTGTGAGTTTGTGAGCGCAGTGGTCctctaatatataaatagactCCTGCAGTGAAAGGCATGAATCATCTTAAGACTCAGGCATTTTGCGGCAAATGTGAGATGAGACACCATGTTTGTGGTCTTGACTtgagctaataaaaaaatacatgcatgtaccTCGTAACTCACTCACTGAACGTCACTCATTCTGACTACTCACAGCCAAATTAACAATACAATGCACACTGACATCAGATCAGTGTGTGCTTCCATGCGTATATATATAGTCAGCTGAGCAGAATCCTCATGCAGTGTTTTCTGCTTcgaggaagaaaaaaatgataatgtaTGGTCTCTGCAGGATTCCATTCGCTTGAAATAGTGATTATTATCAAGATTTTGCGAAAAGTTAAAATGTGTGTACTAGTCTAAGATGCAGTACGTTCTACCATAAATTTAATCAGTGCTGTGTAATTCCACACATGTTTTTTCACAGCTTTAGTTTCATACTCACAATTAATGCGTGGAGTTCAAATGCTGGTCGTTTAATGCAGCTtcaatttatgaaatattaagctTTTCAAGCCCAACACTTTTCTGCATTcagatcagaaatgtttttgatgtgTATCCAGAAGCAACATGCCCACTCAAGCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138749 lncRNA upstream 10398 14306996 ~ 14308382 (+) True G93755
TU138738 lncRNA upstream 34003 14282769 ~ 14284777 (+) True G93745
TU138733 lncRNA upstream 41905 14276615 ~ 14276875 (+) True G93743
TU138722 lncRNA upstream 69258 14248765 ~ 14249522 (+) True G93736
TU138719 lncRNA upstream 73238 14243408 ~ 14245542 (+) True G93733
TU138820 lncRNA downstream 209938 14532022 ~ 14532317 (+) True G93818
TU138847 lncRNA downstream 241307 14563391 ~ 14567101 (+) True G93834
TU138848 lncRNA downstream 246241 14568325 ~ 14568913 (+) True G93835
TU138849 lncRNA downstream 247071 14569155 ~ 14569697 (+) True G93836
TU138852 lncRNA downstream 253296 14575380 ~ 14576330 (+) True G93839
XM_043256281.1 mRNA upstream 42341 14268377 ~ 14276439 (+) True atl1
XM_043256285.1 mRNA upstream 82747 14232374 ~ 14236033 (+) True dmac2l
XM_043255289.1 mRNA upstream 109395 14200850 ~ 14209385 (+) True LOC122356518
XM_043255290.1 mRNA upstream 109395 14200850 ~ 14209385 (+) False LOC122356518
XM_043255297.1 mRNA upstream 122528 14191182 ~ 14196252 (+) True cnih1
XM_043256249.1 mRNA downstream 17807 14339891 ~ 14344861 (+) True tmx1
XM_043255622.1 mRNA downstream 32031 14354115 ~ 14367244 (+) False frmd6
XM_043255619.1 mRNA downstream 32034 14354118 ~ 14369557 (+) True frmd6
XM_043255621.1 mRNA downstream 32595 14354679 ~ 14369557 (+) False frmd6
XM_043255620.1 mRNA downstream 36668 14358752 ~ 14369557 (+) False frmd6
TU138522 other upstream 409177 13739607 ~ 13909603 (+) True G93613
XR_006252431.1 other upstream 1102023 13216658 ~ 13216757 (+) True LOC122357146
XR_006252318.1 other upstream 1729927 12586886 ~ 12588853 (+) False mgme1
TU138047 other upstream 1743568 12571631 ~ 12575212 (+) True G93296
TU137635 other upstream 2714556 11603697 ~ 11604224 (+) False G92977
XR_006252357.1 other downstream 32032 14354116 ~ 14367135 (+) False frmd6
XR_006252421.1 other downstream 784374 15106458 ~ 15226183 (+) True LOC122357077
XR_006252370.1 other downstream 932990 15255074 ~ 15275234 (+) False fam135a
XR_006252400.1 other downstream 973765 15295849 ~ 15314279 (+) False tarbp1
XR_006252368.1 other downstream 1542755 15864839 ~ 15870625 (+) False hps1

Expression Profile