RNA id: TU138820



Basic Information


Item Value
RNA id TU138820
length 296
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G93818
representative True

Chromosome Information


Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 14532022 ~ 14532317 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


cacacacacacacacacacacattctcgtCACCAGGAAGATTACGTAAGTCTAATGAAGGGGAGATGAGCTCAGGAGAGAGTAGGAAGACCGTCTTTGTTTTCGGCCAATAACAAGACAGATAATTAGGGATTGTCGACAGGAAGCGTATTCACAAGTTTTCTCCAAGACTAGTCACGCAatgtttcatcattttaataagaGCGCTATTTCACCACATGACATCACAACGGTGGTGTAAATCATCATTTGACTGAAGGTTTCGTTCCGCCACTGATCACAACAGAAAGCAAGCCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU138760 lncRNA upstream 209938 14318780 ~ 14322084 (+) True G93766
TU138749 lncRNA upstream 223640 14306996 ~ 14308382 (+) True G93755
TU138738 lncRNA upstream 247245 14282769 ~ 14284777 (+) True G93745
TU138733 lncRNA upstream 255147 14276615 ~ 14276875 (+) True G93743
TU138722 lncRNA upstream 282500 14248765 ~ 14249522 (+) True G93736
TU138847 lncRNA downstream 31074 14563391 ~ 14567101 (+) True G93834
TU138848 lncRNA downstream 36008 14568325 ~ 14568913 (+) True G93835
TU138849 lncRNA downstream 36838 14569155 ~ 14569697 (+) True G93836
TU138852 lncRNA downstream 43063 14575380 ~ 14576330 (+) True G93839
TU138853 lncRNA downstream 50002 14582319 ~ 14584477 (+) True G93840
XM_043256342.1 mRNA upstream 44522 14485066 ~ 14487500 (+) True gphb5
XM_043255317.1 mRNA upstream 138835 14377594 ~ 14393187 (+) True esr2b
XM_043255318.1 mRNA upstream 138835 14377594 ~ 14393187 (+) False esr2b
XM_043255316.1 mRNA upstream 138835 14377594 ~ 14393187 (+) False esr2b
XM_043255619.1 mRNA upstream 162465 14354118 ~ 14369557 (+) True frmd6
XM_043256032.1 mRNA downstream 87848 14620165 ~ 14630849 (+) True phf3
XM_043256277.1 mRNA downstream 307465 14839782 ~ 14842432 (+) True zgc:171579
XM_043255731.1 mRNA downstream 341598 14873915 ~ 15011010 (+) False adgrb3
XM_043255732.1 mRNA downstream 341605 14873922 ~ 15011010 (+) False adgrb3
XM_043255730.1 mRNA downstream 341606 14873923 ~ 15011010 (+) True adgrb3
XR_006252357.1 other upstream 164887 14354116 ~ 14367135 (+) False frmd6
TU138522 other upstream 622419 13739607 ~ 13909603 (+) True G93613
XR_006252431.1 other upstream 1315265 13216658 ~ 13216757 (+) True LOC122357146
XR_006252318.1 other upstream 1943169 12586886 ~ 12588853 (+) False mgme1
TU138047 other upstream 1956810 12571631 ~ 12575212 (+) True G93296
XR_006252421.1 other downstream 574141 15106458 ~ 15226183 (+) True LOC122357077
XR_006252370.1 other downstream 722757 15255074 ~ 15275234 (+) False fam135a
XR_006252400.1 other downstream 763532 15295849 ~ 15314279 (+) False tarbp1
XR_006252368.1 other downstream 1332522 15864839 ~ 15870625 (+) False hps1
XR_006252369.1 other downstream 1332522 15864839 ~ 15869803 (+) False hps1

Expression Profile