RNA id: TU138846


Basic Information

Item Value
RNA id TU138846
length 1858
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G93833
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 14613092 ~ 14618650 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttttttttttttttttttTTTGTattgaagctttattttttccatGATTAATCACTTGTGCAGGTAACTGCATTACAAAGTGTCTCTAAATGTAATTGGTCACATGATTACCACATTTACCGTAGAAATGGTTTTCACAGTCTTTGCAAAACACTGaatgataataattacaatGAACGGGACATAAACACAATGCGAAAGTGCTTTTAgaacatacatttaaacatacaaatgATCCTCTATGATTAAACCACATTTTAGTGTGATTTTTGAACTTTAGGATGACCCCATACTTTTGGTTAcaaaagtggcaaaaaaaactaacaaacatattttgagCGTTACATTCTTGTTTTCAAAAtctaatgaaatgtttaaaatcaaacTACAGAGACAATTACGGGCGGTGATCAGTACTCCAGTACATTTCCTATTTGCTTATCCTCTTCAGCAAATCAACCGCTCCACCTACTAGAGCTCCTGTAGCACCACCCACTGATGCCAGACCAGCTGTTGCTGTTGCAGACAAACCAGCAGCACCTAAAAACAGAACACAACCTTATAACAGCAATAACTGAACCATCCCATGTACATTAAATCAGGTACCAattcttcttaaaaatgaattgaacGTGTTTGTTTTGCTCGTATTTCTACTAAATACCTGCAGACTGGAGGATAGCGACCAAACTTCCTGCAGCCACACCGCCCCCATTGGCAATGGCTGCTGAAGACATCATGCCAGCTGCCGTAGAACCTGCTGCGATACCGGCGCCAGTAAAACCAGCCACCCCGAGCGCAACTGGGGCCAGAAGTACGGCACCAGCTAATCggcaaaaaaagtaataaatggtTCAAAGCATTTCTGTGATTATATCATTAATTACTCCcacgtgttgttccaaacctgtaagaccttcattcattttcataacacaaattaagatattttgatgaaatcggaaAGCAATCTGACCCTCCGCAGACAacaacagaactgaaaaaatcctaaatccagaaacgtagtaaatgcATCGGTAAActgtccatgtgacatcagtggctcaacttttactcaaccattcttctcctcTGAGTTACGCCTTTTACGTCCATTTATGTATGTACTAATAACAAACGtcttataggtttggaatgacatgaaggcgagtaattaatgaacaATTTTTCATTTGGGGGTGAACTAACACACAGTAACTATAGTTCACACAGATGTAGACCTAACAAGTTTCTCATAAATACTCGTGCTCTGGCTTTGTCAGAAGCGATTAGGAGAAGTTTAGCATTACATCAGGACTGTTTTCACTGAGTGTCAGATCAggtgtccaaacagctgataaaacctTTACAATAATCCAAATGTAATCCACACCCTTCCAGTCAGTCAATCTATTACACCTTGTGATGCTAGTAAGACCCATGAAAGTGTGTAGAACCATTCTGAATTGTAAACTGTGTTTGAGCTGAGCTTTTTTTCACTGGAAGAAGCAAAATTATGAATAGAGGTCCTGTATTTTAGTGAGAAGTTGTTAAAAACACCTTAATGGATTAACGTGACGCttttatcagatgtttaaaGTCTGACGATCTTTAAGAAAAAGAAGATTATGAAGAAAAGATGCAAGTctaatgctacatttctacaaatctgtTCCGATATAGTCATCTACATTTTGGGAGTCCACAAGACTAGTAAATTTTCAGCACACTTTCATTTAGAGGGAACTATTACTTTATActtctgaaaaacaacaacaacaacatttggTCTTACTACTTACCAGCCCCAGCTGTAAGCCCAATGACGGTGAATAGAGCTTgaggtttaaaaaatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138823 lncRNA upstream 1092 14607396 ~ 14612000 (+) True G93819
TU138821 lncRNA upstream 4523 14607396 ~ 14608569 (+) False G93819
TU138853 lncRNA upstream 28615 14582319 ~ 14584477 (+) True G93840
TU138852 lncRNA upstream 36762 14575380 ~ 14576330 (+) True G93839
TU138849 lncRNA upstream 43395 14569155 ~ 14569697 (+) True G93836
TU139077 lncRNA downstream 59749 14678399 ~ 14678599 (+) True G93966
TU139091 lncRNA downstream 393900 15012550 ~ 15012780 (+) True G93978
TU139226 lncRNA downstream 698962 15317612 ~ 15317817 (+) False LOC122356934
TU139230 lncRNA downstream 705397 15324047 ~ 15329518 (+) True G94091
TU139242 lncRNA downstream 811648 15430298 ~ 15434168 (+) True G94101
XM_043256342.1 mRNA upstream 125592 14485066 ~ 14487500 (+) True gphb5
XM_043255317.1 mRNA upstream 219905 14377594 ~ 14393187 (+) True esr2b
XM_043255318.1 mRNA upstream 219905 14377594 ~ 14393187 (+) False esr2b
XM_043255316.1 mRNA upstream 219905 14377594 ~ 14393187 (+) False esr2b
XM_043255620.1 mRNA upstream 243535 14358752 ~ 14369557 (+) False frmd6
XM_043256032.1 mRNA downstream 1515 14620165 ~ 14630849 (+) True phf3
XM_043256277.1 mRNA downstream 221132 14839782 ~ 14842432 (+) True zgc:171579
XM_043255731.1 mRNA downstream 255265 14873915 ~ 15011010 (+) False adgrb3
XM_043255732.1 mRNA downstream 255272 14873922 ~ 15011010 (+) False adgrb3
XM_043255730.1 mRNA downstream 255273 14873923 ~ 15011010 (+) True adgrb3
XR_006252357.1 other upstream 245957 14354116 ~ 14367135 (+) False frmd6
TU138522 other upstream 703489 13739607 ~ 13909603 (+) True G93613
XR_006252431.1 other upstream 1396335 13216658 ~ 13216757 (+) True LOC122357146
XR_006252318.1 other upstream 2024239 12586886 ~ 12588853 (+) False mgme1
TU138047 other upstream 2037880 12571631 ~ 12575212 (+) True G93296
XR_006252421.1 other downstream 487808 15106458 ~ 15226183 (+) True LOC122357077
XR_006252370.1 other downstream 636424 15255074 ~ 15275234 (+) False fam135a
XR_006252400.1 other downstream 677199 15295849 ~ 15314279 (+) False tarbp1
XR_006252368.1 other downstream 1246189 15864839 ~ 15870625 (+) False hps1
XR_006252369.1 other downstream 1246189 15864839 ~ 15869803 (+) False hps1

Expression Profile