RNA id: TU138849


Basic Information

Item Value
RNA id TU138849
length 543
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G93836
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 14569155 ~ 14569697 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ctgaaaactaaaaataattgtttttaatgctaTATTTGATTACTTCTAACACCTTAGCAGATTATTAGTGTTTACGTGAGCAATGGATAACACCAGAGGTAGCCTAAATCCAAAAACAGCATAAAGAGCAGGGCAACATGCTATTTGTTCATgctttgtaaaacaaaacaaaacaaaacattgttttctcgTCAAAACGGTCTGATGAGCCTGGTTCTATGAAGCTAAGATTTGTTAGcccaaaaacccaaaaaacgTCACACCCCTTTACCATTACAGGTTGCATATAAACTGTGGGGTTAGCGATGTCACAAACCCAGGAAGAGGCTCGATGTAGTCCTTAAAAGCCTTTTTGTAACTTTAAAGTTATATACGtttttttatctataaaaacatccttccatgtaaaaatattaataaaaaaaaaataagtttcatGTTTCAGTAACTTTACATTGTCTTACCAGTATGGAGTGCATGCCCATGTATATACGGCTCAAACACACCAGGACACACCAGCTGATGGCTAGAGAGAGACCAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138848 lncRNA upstream 242 14568325 ~ 14568913 (+) True G93835
TU138847 lncRNA upstream 2054 14563391 ~ 14567101 (+) True G93834
TU138820 lncRNA upstream 36838 14532022 ~ 14532317 (+) True G93818
TU138760 lncRNA upstream 247071 14318780 ~ 14322084 (+) True G93766
TU138749 lncRNA upstream 260773 14306996 ~ 14308382 (+) True G93755
TU138852 lncRNA downstream 5683 14575380 ~ 14576330 (+) True G93839
TU138853 lncRNA downstream 12622 14582319 ~ 14584477 (+) True G93840
TU138821 lncRNA downstream 37699 14607396 ~ 14608569 (+) False G93819
TU138823 lncRNA downstream 37699 14607396 ~ 14612000 (+) True G93819
TU138846 lncRNA downstream 43395 14613092 ~ 14618650 (+) True G93833
XM_043256342.1 mRNA upstream 81655 14485066 ~ 14487500 (+) True gphb5
XM_043255317.1 mRNA upstream 175968 14377594 ~ 14393187 (+) True esr2b
XM_043255318.1 mRNA upstream 175968 14377594 ~ 14393187 (+) False esr2b
XM_043255316.1 mRNA upstream 175968 14377594 ~ 14393187 (+) False esr2b
XM_043255620.1 mRNA upstream 199598 14358752 ~ 14369557 (+) False frmd6
XM_043256032.1 mRNA downstream 50468 14620165 ~ 14630849 (+) True phf3
XM_043256277.1 mRNA downstream 270085 14839782 ~ 14842432 (+) True zgc:171579
XM_043255731.1 mRNA downstream 304218 14873915 ~ 15011010 (+) False adgrb3
XM_043255732.1 mRNA downstream 304225 14873922 ~ 15011010 (+) False adgrb3
XM_043255730.1 mRNA downstream 304226 14873923 ~ 15011010 (+) True adgrb3
XR_006252357.1 other upstream 202020 14354116 ~ 14367135 (+) False frmd6
TU138522 other upstream 659552 13739607 ~ 13909603 (+) True G93613
XR_006252431.1 other upstream 1352398 13216658 ~ 13216757 (+) True LOC122357146
XR_006252318.1 other upstream 1980302 12586886 ~ 12588853 (+) False mgme1
TU138047 other upstream 1993943 12571631 ~ 12575212 (+) True G93296
XR_006252421.1 other downstream 536761 15106458 ~ 15226183 (+) True LOC122357077
XR_006252370.1 other downstream 685377 15255074 ~ 15275234 (+) False fam135a
XR_006252400.1 other downstream 726152 15295849 ~ 15314279 (+) False tarbp1
XR_006252368.1 other downstream 1295142 15864839 ~ 15870625 (+) False hps1
XR_006252369.1 other downstream 1295142 15864839 ~ 15869803 (+) False hps1

Expression Profile