RNA id: TCONS_00011036


Basic Information

Item Value
RNA id TCONS_00011036
length 327
lncRNA type antisense_over
GC content 0.53
exon number 2
gene id XLOC_004991
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 47580022 ~ 47580566 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTCAAAAGCGTATCTGCCGGGGTCTTTGACGTTCTGTGTGGTTTTGTCGTAGCTCTTGGAGTCGACATTAATGGCACTCGGAGCTCCAGGAGCCAGAAACTCCTCCCAGATCTCCTGAACCCTGGTGGGTACTTCACGAATGGGTCGTTTCTTCAGCTCCTGAACCGACAGCCAAAACCTGCACGCCAAAACCAGCATAAAGTTCTCAGAGCTGAACTCAGACTCCAGAAACTTGAGGAACTGTTCTCTGCCCACCGGATCCTTCAAGACCTCATCGAAGCAGAAACCCCAGCGCTTGACCCGCTGCTGACCGGGTTCTttactga

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010775 lncRNA upstream 543602 47035721 ~ 47036420 (+) True XLOC_004984
TCONS_00009729 lncRNA upstream 886579 46683212 ~ 46693443 (+) True XLOC_004976
TCONS_00010774 lncRNA upstream 1036833 46542671 ~ 46543189 (+) True XLOC_004970
TCONS_00011035 lncRNA upstream 1348151 46188296 ~ 46231871 (+) True XLOC_004963
TCONS_00011034 lncRNA upstream 1477602 46078647 ~ 46102420 (+) True XLOC_004962
TCONS_00010776 lncRNA downstream 26305 47606871 ~ 47610330 (+) False XLOC_004992
TCONS_00010777 lncRNA downstream 27773 47608339 ~ 47610330 (+) True XLOC_004992
TCONS_00011038 lncRNA downstream 748300 48328866 ~ 48330894 (+) False XLOC_005002
TCONS_00011037 lncRNA downstream 748300 48328866 ~ 48330894 (+) True XLOC_005002
TCONS_00011039 lncRNA downstream 833961 48414527 ~ 48419991 (+) False XLOC_005005
TCONS_00009760 mRNA upstream 38732 47446158 ~ 47541290 (+) False XLOC_004990
TCONS_00009762 mRNA upstream 39385 47448588 ~ 47540637 (+) True XLOC_004990
TCONS_00009761 mRNA upstream 39487 47448558 ~ 47540535 (+) False XLOC_004990
TCONS_00009758 mRNA upstream 123043 47280839 ~ 47456979 (+) True XLOC_004988
TCONS_00009759 mRNA upstream 149104 47424427 ~ 47430918 (+) True XLOC_004989
TCONS_00009763 mRNA downstream 82853 47663419 ~ 47667745 (+) True XLOC_004993
TCONS_00009764 mRNA downstream 117790 47698356 ~ 47734957 (+) True XLOC_004994
TCONS_00009765 mRNA downstream 193398 47773964 ~ 47797668 (+) True XLOC_004995
TCONS_00009766 mRNA downstream 213523 47794089 ~ 47862432 (+) True XLOC_004996
TCONS_00009767 mRNA downstream 326711 47907277 ~ 47928832 (+) False XLOC_004997
TCONS_00009746 other upstream 642067 46883844 ~ 46937955 (+) False XLOC_004982
TCONS_00009747 other upstream 642076 46915371 ~ 46937946 (+) True XLOC_004982
TCONS_00009724 other upstream 976467 46603441 ~ 46603555 (+) True XLOC_004973
TCONS_00009703 other upstream 2953015 44626890 ~ 44627007 (+) True XLOC_004951
TCONS_00009686 other upstream 6119388 41460518 ~ 41460634 (+) True XLOC_004935
TCONS_00009795 other downstream 1235594 48816160 ~ 48825502 (+) False XLOC_005016

Expression Profile

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