RNA id: TU139455



Basic Information


Item Value
RNA id TU139455
length 330
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G94247
representative True

Chromosome Information


Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 15967014 ~ 15967343 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CTGccgtttatatttatatgcaaattcaTTAATGATGGAACCAATTAATCTGAAGCTATTGAATGTCTCTGCCCGGCTGAACAGTGAACTTGCCATGAAACTAATTTCTAATTTCAGTGTCTGAGAGACATTTCTCATTCGTCCAGGGTAAGCGGATCTAGCCTATATGGCCTTCTCTGCATGAAAATAGCAGATCATCATCACATATCCTCCGGTGATGCCAGGcaaattgtaaattaattgCATCAGATAATCATTTTGAGGTCCTGTCCATGTTCTGTCATTAAGGATGTGCCATGTTTTACTTGTTCCAATTAATTATAAACCATT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU139429 lncRNA downstream 59523 15907270 ~ 15907491 (-) True G94232
TU139407 lncRNA downstream 81792 15877527 ~ 15885222 (-) False G94216
TU139382 lncRNA downstream 203269 15763424 ~ 15763745 (-) True G94200
TU139381 lncRNA downstream 204171 15762551 ~ 15762843 (-) True G94199
TU139369 lncRNA downstream 246198 15686413 ~ 15720816 (-) False zgc:123010
TU139518 lncRNA upstream 362799 16330142 ~ 16332347 (-) True G94298
TU139539 lncRNA upstream 409230 16376573 ~ 16376923 (-) True G94308
TU139696 lncRNA upstream 455323 16422666 ~ 16423793 (-) True G94411
TU139699 lncRNA upstream 462498 16429841 ~ 16430293 (-) True G94414
TU139701 lncRNA upstream 463331 16430674 ~ 16432430 (-) True G94416
XM_043254666.1 mRNA downstream 73337 15889973 ~ 15893677 (-) True morn4
XM_043255688.1 mRNA downstream 90177 15872075 ~ 15876837 (-) False st3gal7
XM_043255687.1 mRNA downstream 90193 15872075 ~ 15876821 (-) True st3gal7
XM_043255330.1 mRNA downstream 173476 15778448 ~ 15793538 (-) False LOC122356531
XM_043255329.1 mRNA downstream 173477 15774777 ~ 15793537 (-) True LOC122356531
XM_043254592.1 mRNA upstream 42344 16009687 ~ 16169204 (-) False pcdh15a
XM_043254587.1 mRNA upstream 42344 16009687 ~ 16169204 (-) False pcdh15a
XM_043254591.1 mRNA upstream 42344 16009687 ~ 16162753 (-) False pcdh15a
XM_043254594.1 mRNA upstream 42344 16009687 ~ 16162753 (-) False pcdh15a
XM_043254590.1 mRNA upstream 42344 16009687 ~ 16162753 (-) False pcdh15a
TU139406 other downstream 81792 15877527 ~ 15885222 (-) True G94216
XR_006252348.1 other downstream 173476 15777479 ~ 15793538 (-) False LOC122356531
TU139376 other downstream 211954 15752647 ~ 15755060 (-) True nkx2.3
TU139299 other downstream 324511 15642031 ~ 15642503 (-) True G94147
TU139278 other downstream 383097 15564617 ~ 15583917 (-) True G94128
XR_006252284.1 other upstream 44459 16011802 ~ 16162753 (-) False pcdh15a
XR_006252287.1 other upstream 46974 16014317 ~ 16162753 (-) False pcdh15a
XR_006252286.1 other upstream 46974 16014317 ~ 16162753 (-) False pcdh15a
XR_006252285.1 other upstream 46974 16014317 ~ 16162753 (-) False pcdh15a
TU139489 other upstream 322811 16290154 ~ 16292366 (-) False cisd1

Expression Profile