RNA id: TU140164


Basic Information

Item Value
RNA id TU140164
length 1948
lncRNA type sense_over
GC content 0.36
exon number 4
gene id G94750
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 18263524 ~ 18270603 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GgacaaaatataacaatttgaGGCGAAGTGCTCATTAGCAGCTGATTTCACCACAACTTTCAGGGTTActggcaaattaaaaaaaaaaagtatggcgttaagtaattaattatattgtcttttttaataGTTGCTGATGTCCAAATTTCCAAAATTGCTTCATGCGAAGACAgtgagtatatatgtatatgtatatatatatatatatatatatatatatatgtatgtgtgtgtgtgtgtgtgcataattcAATTTCTAATCATAATTCAACATTATAGCCCTTTATTCTTCACTCTGTTTCTTACTTCTGTTACTCATccaatatttttacatttacagtggTTTCTTTAGTTACAGCTTCTCCTCATCAGACAGTGAATGTGAgtaagacatatatatatatagacatatatatatatatatatatttcatttcgggaagaacattttaaataaccgATAAATTTAAAAGCAAGTCCTGCAGTACAGTTAAAccttgtttaacaaaaaaaaaaacaaaacttaatatTGAACAAGGAActcaataatttaatattaatataatatatacttttgttATATAGGTAACTCATTAACCTCATTAAGTTTCACTTCCGAATGAAGCCTGCCGGGGGGGAGAGTGGCCTGggagtaataaaataaaaatctgacctGCATCAAATACAGAAGTCcgtaatgtaatgtatattttgatGATTCATATTAATGTCTAGGTGggtctaaaacaaaaatattgtcatGACTGCAAACATTTGATGAAGTTGAAAGCTTGCTGTTTGccaattacaaaacatttgtaaatatgttatttcttaataataaagaaatcttAAATCGTGAAAAAGTGATTTGCTCATGTTCGTAAGTGTCTGCAGAGTCTTGGTTACTACAAAACATAGATGAAAAGAAATGTGTGGCGCATTAAGAGAAATGATCGGTTATTTCGGTATGTTTCTACATGGTGAGtgaaaaagctattaaaatagcaacaaaactgtgatttgtgttttgttgtaatCAAAATCTTGTTGATTTATTAGCTTAGGTGGAGCATAACAAAAATACGTTTTCTGGCAAATCAGCAGTCCCGCATGCAAATTTAACCAGTTGACATTTCTTTTATGaacttgctaaataaaatgccTAAATCTACTTAATGTTTGTGTTGCAACCAGTAGACTGCTTAAAGGGgccactgtccctttaagagcaaCCTACGCTTGTTTATCCTGTTCAGTAACGAGGTTGAGAGTGGAGTGACTGACGGCGATCCACGAATAAAACCAGCAGCTGTGGAATGCCAGTCAAGGAGCCACTCCCATTATAATTTCAAAAGTTATTATACCGTGAATGTTCCAGTGAAAGCACCAAAATGGCAGAATTAGTCTCTGATGCTCAAAATCCTTTAAACTGCCCGATCTGTCTGAACCTGTTTAAGAACCCGTGACTACAGCCTGTGGGCACAGTTTCTGTACGGACTGTATAAAGGGTTGCTGGGATCGAGATGCTTCTTTGAGGCGAGTGTACAGCTGCCCTACATGCAGGAAGACGTTCAACCGAAGACCAGATCTCAGCAGAAGCACGGTCCTGGCTGAGATTGTAGAGGGAATGAAACAGGAAGTTCCAGCTAAGCCTGAAGATGTTACGTGCGATTTTTGCAAAGGAAGAAAACTCAAAGCCGtcaagtcttgtttgttttgtatggCTTCTTACTGCCCAACTCACATTCAGCCTCATTACGAGTCTGAAGCTTTTAAGAAACACAAGCTGGTAGACGCTCGGATCTACAGCAGCAGATCTGCCCTCAGCATCATAAAGCTCTGGAGATATACTGCTATAACGACCAGAAGTGTATATGTAGTAGTTTGTATGGGGACTCAACACAGTGGACATCGAACGGTCTCAGCTGCAGCTGAAATGGCAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140151 lncRNA upstream 101244 18161977 ~ 18162280 (+) True G94741
TU140025 lncRNA upstream 373623 17889654 ~ 17889901 (+) True G94637
TU139885 lncRNA upstream 1018555 17212947 ~ 17244969 (+) True G94543
TU139822 lncRNA upstream 1233449 17021864 ~ 17030075 (+) True G94501
TU140167 lncRNA downstream 102960 18373563 ~ 18375173 (+) True G94753
TU140208 lncRNA downstream 249037 18519640 ~ 18519911 (+) True G94785
TU140210 lncRNA downstream 255799 18526402 ~ 18526631 (+) True G94787
TU140197 lncRNA downstream 274749 18545352 ~ 18631718 (+) True G94776
TU140199 lncRNA downstream 274749 18545352 ~ 18631718 (+) False G94776
XM_043255908.1 mRNA upstream 2244 18260197 ~ 18261280 (+) True LOC122356837
XM_043255689.1 mRNA upstream 137048 18119711 ~ 18126476 (+) True bsdc1
XM_043255690.1 mRNA upstream 137048 18119711 ~ 18126476 (+) False bsdc1
XM_043255691.1 mRNA upstream 137048 18119711 ~ 18126476 (+) False bsdc1
XM_043254717.1 mRNA upstream 150046 18083502 ~ 18113478 (+) True olig4
XM_043256068.1 mRNA downstream 97711 18368314 ~ 18371353 (+) True LOC122356945
XM_043255004.1 mRNA downstream 473403 18744006 ~ 18771823 (+) False tmem63ba
XM_043255003.1 mRNA downstream 473404 18744007 ~ 18771823 (+) True tmem63ba
XM_043255006.1 mRNA downstream 473404 18744007 ~ 18771823 (+) False tmem63ba
XM_043255005.1 mRNA downstream 473404 18744007 ~ 18771823 (+) False tmem63ba
TU139910 other upstream 687586 17560296 ~ 17575938 (+) False G94564
TU139911 other upstream 701276 17560296 ~ 17562248 (+) True G94564
TU139637 other upstream 1658141 16597781 ~ 16605383 (+) True G94378
TU139570 other upstream 1744698 16515827 ~ 16518826 (+) True G94324
TU140175 other downstream 168570 18439173 ~ 18439583 (+) True G94760
TU140212 other downstream 266289 18536892 ~ 18537443 (+) True G94789
TU140195 other downstream 274749 18545352 ~ 18631718 (+) False G94776
TU140499 other downstream 885693 19156296 ~ 19162325 (+) False lhcgr
XR_006252404.1 other downstream 1286546 19557149 ~ 19589504 (+) False foxn2a

Expression Profile