RNA id: TU140195



Basic Information


Item Value
RNA id TU140195
length 1100
RNA type TUCP
GC content 0.44
exon number 2
gene id G94776
representative False

Chromosome Information


Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 18545352 ~ 18631718 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GCCACCCACCCCTTCTCACCAGAGCCAGCTCAGCCGAAAAAACACACCGTTAACCAGCCAGACGCTGCATCAGCATTCACGCGTTACTCTGTAGATCTGACAGGAGCGCAGGAACGAGGCCCAGAGAGCATCACCTACAGCTGGACAAGAAGAGACGCTTTATTGCTCGAACACAAAAGAATCCCACAAACAGCAACAAACTGAGACCACACCAGCAGATTAAATCTTTTCgtttttttgtcgtttttttatttagtttgaaacaaaacaataatattaaaacaaaagcactCAAGCTATTACTTCGATCGAGAAAAGACAAATCTGTTCCACGGGAAAATGGATTGATTTAACCCTCCAGCAAAGCCATGCGTCATAGCACCTGCTCGGGAAAGTATCACCACTTCAGAAGAACAGAAATATCAGGACTTTTGGAAAGCAGTGATCTATGTCACCAAAGGCCAAACGGTTCACAACGGTCTAGAAGTACCCAGCCAAACGGGTTCAGAATGAAAGTATGCCCTATAGTACATTATTTCTTGTTTTACGGCTAGTTAAGATGTGATTGGTGAGTTGTTATATTTTGGGATACACTATGAGATAACACATGAACGGCTGCATGTGCGCGAGCGTGATTATTACAAAGCGATGCTGGccagaaaatataaaagtagaGTTCAAAGAGATTACGAAAGACTGGGCGAGTGAAGCAATGCacagcagtacaaaaaaaaaaacccaacaaaactGTACACACAGATGGGGAAAAGACTtctggaagacaaaaaaaaagatgaaaagcagACAAATAAACAATCAGGAAGACAATAAACAGACAAGTGTACAAGAGGACAAACTCTTACATGTTTCcaaagacaaacagagagaaagaaagacagatggTCGTAAGGTAAGAAGGGGTTGTTCTAGGCTCTGTAGAGCAGGATTCTCTCTGCACATGTCTGGCCCACCAGACTAGCGTACTGCTCCACTTCCTTCTCGTCGTTCGAACCCTTCCGCTTACGAGCGTAGGCTGCATATGGCATCACTGTCCTCCTGTGAAGCACTAAGACCCTGGCCAGCTCCTTCAGCGCACGAGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU140210 lncRNA upstream 18721 18526402 ~ 18526631 (+) True G94787
TU140208 lncRNA upstream 25441 18519640 ~ 18519911 (+) True G94785
TU140167 lncRNA upstream 170179 18373563 ~ 18375173 (+) True G94753
TU140164 lncRNA upstream 274749 18263524 ~ 18270603 (+) True G94750
XR_006252355.1 lncRNA upstream 280756 18263308 ~ 18264596 (+) True LOC122356621
TU140243 lncRNA downstream 148683 18780401 ~ 18785449 (+) True G94816
TU140367 lncRNA downstream 197598 18829316 ~ 18829539 (+) True G94883
TU140407 lncRNA downstream 268900 18900618 ~ 18933128 (+) False G94913
TU140404 lncRNA downstream 268950 18900668 ~ 18956194 (+) False G94913
TU140405 lncRNA downstream 268950 18900668 ~ 18955920 (+) False G94913
XM_043256068.1 mRNA upstream 173999 18368314 ~ 18371353 (+) True LOC122356945
XM_043255909.1 mRNA upstream 277518 18264627 ~ 18267834 (+) True LOC122356838
XM_043255908.1 mRNA upstream 284072 18260197 ~ 18261280 (+) True LOC122356837
XM_043255690.1 mRNA upstream 418876 18119711 ~ 18126476 (+) False bsdc1
XM_043255004.1 mRNA downstream 112288 18744006 ~ 18771823 (+) False tmem63ba
XM_043255003.1 mRNA downstream 112289 18744007 ~ 18771823 (+) True tmem63ba
XM_043255006.1 mRNA downstream 112289 18744007 ~ 18771823 (+) False tmem63ba
XM_043255005.1 mRNA downstream 112289 18744007 ~ 18771823 (+) False tmem63ba
XM_043254553.1 mRNA downstream 141469 18773187 ~ 18776934 (+) False LOC122356089
TU140212 other upstream 7909 18536892 ~ 18537443 (+) True G94789
TU140175 other upstream 105769 18439173 ~ 18439583 (+) True G94760
TU139910 other upstream 969414 17560296 ~ 17575938 (+) False G94564
TU139911 other upstream 983104 17560296 ~ 17562248 (+) True G94564
TU139637 other upstream 1939969 16597781 ~ 16605383 (+) True G94378
TU140499 other downstream 524578 19156296 ~ 19162325 (+) False lhcgr
XR_006252404.1 other downstream 925431 19557149 ~ 19589504 (+) False foxn2a
XR_006252347.1 other downstream 986294 19618012 ~ 19665614 (+) False LOC122356529
TU140828 other downstream 1315812 19947530 ~ 20004002 (+) True G95223
TU140845 other downstream 1445567 20077285 ~ 20102120 (+) True G95239

Expression Profile