RNA id: TU141232


Basic Information

Item Value
RNA id TU141232
length 2971
lncRNA type sense_over
GC content 0.49
exon number 3
gene id LOC122356211
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 20264726 ~ 20275386 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGCGACACCTGCGTTCGTGCGTCACACCGAGGTTCCCCTCGCATCTCACCGAGCGCCGGAGCAGGAGCGCGGGGAAACACTCGACGTTTAGCGGCGTTCGGCGGATGCACCGCGTCTGAGGTGTTGCGGGTTCGCGTTCGGGCGGAGTCGAGCCTCACACGGAGCAGCGGCGCACTTCAGgactCAATCATGAAGGACGGAATGGCCAACAACAGCACCGCCAGCATCTCTCAGGCCCGGAAAGCCGTGGAGCAGCTGAAGATGGAGGCCTGCATGGACAGGATAAAGGTGTCCAAGGCGGCGGCGGACCTGATGGCGTACTGCGACGCTCATATACGAGAGGACCCGCTCATCGTGCCCGTCCCGGCGTCAGAAAACCCGTTCCGGGAGAAGAAGTTCTTCTGCACCATCCTCTGAGGCCGGGCCGGGCCGCTGGTTCTGCCGCGAGGTTTCCACGTCCCTGGCTGCCGCCGCTGAGCTGTGTTTGATCGGCGGCGGCCCCGTCCCTCCTGGACGCCCgtggggtggggtggggggtTTGGGGGTTTGGGGAGGGGGTCGAATAACTGGCAACCCGGTCAGAGCGTCTCGTGTCTCGTTAAATAGGTTCGTTATTGCTTCGTAATTAGAGAACAGCCTTTCTCACTGCGTATGGGatgagagattttttttgtgttttcgtGCCACAGAAGCTGTTTGATATGCATTGCCGGTCAAATGTTTGGACGCACTTGAGCCggtcttcagaaaaaaaaccagCTCATGCATCAATAACAAACAACAACTCAGTGTAACAGTCATTCCTGTGCACCCCTGCATTCATTAGATCGACGGAAATACATGTCAGGTCACGCAGTTTTTTCCCGCTACTGCTAATatgtattagtatttattaaaaataataataataactctcTGCAGCTCAATGAATCAATTTAGTTTTGGTGAGGTTGCATGCAAAACTGGAATTTAATTAAGTTCAAAAGTGCATTTGATTGATTGCATGTCCCAAGCGATCTCTACACTACtcccatttgttttatttcacaggTCATTATGAATATCGCTCAATAACTCGTGCACCGTTTTTAGGTTTCGAGCGAAATGCCTCGTTTGGCTCGTCGCTCGCGTGCATGAATTGCCTCTTAAAAATGCGTTCAGACGGAGTCGGCTGatttaaatgatatttcacaGCACTTCTGGTGAAAACGAGCCGGTGTGTCCGAACCTTTGACCTCTGCTGCGTCTGTAATGCGTTTCCGTTTACGCCATTTCCCGCCTCTCCCCGTTTCCCGGCGATGTTTTGAATCGAATCCCGTCCGGTTTCCGACTGGCCTTGTGATAAACAGAAGCGCGCGCCGCCGACAAGGCCCCCCTCGAGAGCAGCTCTCAGAGATACCGAATCCGAATCGGTTGGGTTCGAGCTCGGGCTTTCGAGGCGTTTCGTTTCGCTTTACAAACGCCCGTATAAAACCGAGCGGGCCGGGAGTTAATTTCCTCTTTATCACAAGGTTATTCGGATATTCCACCTTCGCGCGGAAGCCGAAGCGCGTCGTTTTAGGGAAGTCGACCTGCAGATGAACGCAAATGCGCATTAAATGGGGACGTAGATGAGCTTGCTTCTTCGTCCGGTTTTGGAGAGCGCGGCGTTGAGTCggcggatgggtgccgtcagaggaGACAAAAACCCAGCCACGGGTTTGTTCGGAGCAGTCTTTGCGGCGCTTGATCTTATCGTGACGGTCGTTTCGggctctcgttccgacggcacccattcacaccCATTACTGACGCATTTCTCCGGATCCGACGAAGACACAAAACCCCAACTTTTCCTCGAACGACACGCATCACCTTTAAATTTCCGTCCCAAATCACCTTTTTTTAATCGCTCGGTAACGCCTTCCCACTCAAAAAGGCGTATTCTTTCCTCGAACCACTGATTTCTGACGGTTCCCCCGCATTTTCCGAACGGCCTTTCTAACGCCGGCATGTCTCACGCTAGTTTTTCTGACTCGTTTTGCCTGTCCTGATTTCAACAGCAAGGCCTTTGACTGAAATGCCAAACGGAGAgcctgcatgtgtgtgtatcttacctgctgcgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtatagagagATGGTTTCTGAGTGCCAAGTACTGTGACTATGGCGTGTCCTCTACACTGTTATTTCACAGGCTTTTTCctattcaaaacaaacaaaaaaaaagcacaatgtcAAACGTTTTTCTTTATATCACTGTAATTTTAGTCTAGCCTTTGCTAATTTATATGAAACCAAGTGTTATTATATCTAATGCGCAGCACCTGATTGAGGTGTCTCTTGTGTAATCTGTATTAAAGCCCCTTTAAAGCGTGCCACGGTGGACGGAGGGTCTTTTTGACGCCCAAACTCATCTAATAGCCGAAGGTCCACCTCGGAGAAGTGCAcagatgtacattttaaaatgctaacgTTGCATGAGATCGCCTTTAAAgtcagagaaaacaaagagtgTGTGTACGGTGGGTGTTTAAACTGATATCGTGTTCTAAAACgcttaatatttacttttataatagcGCTAATGCTCCGTGTGTGTTCAGTGAGAATGAGGGTTTGTTGGTTTTCCAAGCGAATGGAGTCCAGCTTATTTCTACACAGTCAAACccccaaaatgtaaatgaactTTTAAATACTGTTACAACGATGATGATTATGAAAACATAACTTGCATGGACTGATTACcctatttaaatattagaacTTTGAGATACCTTGTAATTGAATCGATGCCTAAATGTATGGATTTGTTGGTGCTTTTCTGCACTTTTCTCTTTTAGAAGTCTGAATGTTTAGATCTGTGCAGTtgtacaaattaataaacattttaaaaccgTCTGCATTCACTGTTCAGCGTGATATGCTTGGTTTGTCGCGCTCGCTCTGATTTGCACAACACGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141230 lncRNA downstream 26499 20236678 ~ 20238227 (-) True G95506
XR_006252294.1 lncRNA downstream 123768 20108191 ~ 20140958 (-) True LOC122356209
TU141210 lncRNA downstream 124040 20114726 ~ 20140686 (-) False LOC122356209
TU141188 lncRNA downstream 188789 20075371 ~ 20075937 (-) True G95469
TU141149 lncRNA downstream 343086 19921002 ~ 19921640 (-) False LOC122357123
TU141247 lncRNA upstream 239517 20514773 ~ 20515311 (-) True G95519
TU141256 lncRNA upstream 243344 20518600 ~ 20520093 (-) True G95524
TU141285 lncRNA upstream 344791 20620047 ~ 20620719 (-) True G95537
TU141279 lncRNA upstream 346006 20621262 ~ 20623143 (-) True G95535
TU141282 lncRNA upstream 346006 20621262 ~ 20678269 (-) False G95535
XM_043256232.1 mRNA downstream 473 20245487 ~ 20264253 (-) False b3galnt2
XM_043256231.1 mRNA downstream 476 20245487 ~ 20264250 (-) True b3galnt2
XM_043255557.1 mRNA downstream 45826 20150458 ~ 20218900 (-) True arid4b
XM_043255630.1 mRNA downstream 119258 20142549 ~ 20145468 (-) True tomm20a
XM_043255693.1 mRNA downstream 160854 20101059 ~ 20103872 (-) True irf2bp2a
XM_043254721.1 mRNA upstream 521 20275777 ~ 20345682 (-) True lyst
XM_043256235.1 mRNA upstream 71891 20347147 ~ 20502648 (-) True nid1a
XM_043254780.1 mRNA upstream 246391 20521647 ~ 20542635 (-) True eif2ak2
XM_043256110.1 mRNA upstream 267519 20542775 ~ 20546992 (-) True LOC122356970
XM_043255695.1 mRNA upstream 297064 20572320 ~ 20595986 (-) False mypn
XR_006252430.1 other downstream 120999 20143596 ~ 20143727 (-) True LOC122357145
XR_006252356.1 other downstream 357664 19868013 ~ 19907062 (-) False disc1
TU140311 other downstream 1591833 18545581 ~ 18672893 (-) True LOC122356088
TU141250 other upstream 204669 20479925 ~ 20486704 (-) True G95520
TU141252 other upstream 206187 20481443 ~ 20486704 (-) False G95520
TU141235 other upstream 213529 20488785 ~ 20492076 (-) True G95510
TU141237 other upstream 218386 20493642 ~ 20496864 (-) True G95511
TU141260 other upstream 294782 20570038 ~ 20571562 (-) True G95526

Expression Profile