RNA id: XR_006252426.1


Basic Information

Item Value
RNA id XR_006252426.1
length 1687
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id LOC122357128
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 22137388 ~ 22143970 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGGAGAGCTGTAGGCCGGCATGATGACGAACACCGGGATACGCAGCTCCACCGCGTGATACGCCACCGCCATCGAGAAGTTACAGTCCGTGGCCACGATCACGCCCTTCCTCTGCTGATCCTGCACAGCTCAGGGTGTCTTCTGGATGCTGCTCTGCTGGAGTCTGAAGGCAGCGGCGCTGATGTCCTCGAAGCGGAGGTGGTCAGGGACAGCTTTGGCTGTAGTCTTGCTCTCTCCGCTCTTCTTCGGTGGTTTGGGTGTGGACATTAACTGGAGCTCCGCCGCTTGAGAGACGCTGCCCTCGTGGACCCTCACGTCTCCATTGAGGACTTGACAGGGTTATTGCTCTCACTCATGTTTACCGcggcaggaggaggaggaggaggctgaggaaGAGTCTGAGGAGCACACACACTACAGCGTGAAGGAGCGTTCTCTGTGATCTGTGGAAGAGCTAGAGATGAAGACGGGTCTGGAGCAGCGGCTCTGTCTGAAGCTCCAGGAGAAGCTGAGGGAGATCTCAGCGAGAGAGCTTTGTGCGTCTCAGGAGTCGAAGGTGAACCGGTGGATGGAGGAAGAGCGGGATGGGATGAAGAACACAGAGGGTCTGCTAAACGCCGGTGAAGCTCAGACTCAGGAGGACACTGAGGAGGTTCTGGAGGCTCTCTAAGGGTTTCAGACACACACTACCCGTCAAACGTTTCTAAAACGTAAGatctttgatgtttttaaaagaagtctcttctgttcTCCAagcctgcttttatttgatccaaaatacagcagtGATATTGTGAATATcctactatttaaaaatgctttctattaGAGTTTTAgcagcattactccagtcacatgatcctttagaaatcgtTCTAATGTTCTGATTTGCTCGTTTATTATTATGTCTAAAACAGCTAATTAGAAATTCATCTCAAATAGAAAGcctttgtaacattacaaacatCAGTTTCGATcgatttaaatgaaatgattgaTTTCTAGAACTCAAGCTTTTAAATTGTGTAGTGTATAATTtcacaaaagctttttatttgagATAAATGCTATTCAGCAGAGGATCCTGAAAGAATGCATTGATGATAATGATAAGGATCGCGTGACTGAAAAATCTGCTTTGaaatcatttgattttaaaacattttcaaatatttacactttattcgtatttacattttaaagcagacGCTTTTCTCTCGAAAATGAAGACGGTGGAAGCAATCGAAACCAACAGAAGAGCAGTAACACGCACACAAAGATGAGTCTCTTAGTGCaatatatatgctttaaagaaaacaagtagaGAATATCAAcaaaattaagaaacaaacagaatagaaaaaagaaatctagtgtcagaaagagagcaagagaatGAATATGCCATTGATAAATGGTCaaggctgtgtttttttgtaaataaaacagacagacGGATCAAATAGAATTAGAGTAGATGTGCTAACGATGAAGGAGATGTGTCTTAGCTGTTTCTTGAAGAAGGTTAAGGACCGCTCGGATAGAGTTACACATAGAAAgcatctatattttaaatacaagtatctactgtttttgctgtactttgaaTCAAACAAGCAGCGTctcggtgagcagaagagactcgTGAAAGATCTTACGGAGGTGTCCCACCTCTGCCAGAAGGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141813 lncRNA downstream 997 22135936 ~ 22136391 (-) True G95922
TU141782 lncRNA downstream 16946 22114696 ~ 22120442 (-) True G95902
TU141784 lncRNA downstream 97282 22039782 ~ 22040106 (-) True G95903
TU141779 lncRNA downstream 262459 21874513 ~ 21874929 (-) True G95899
TU141539 lncRNA downstream 642235 21487514 ~ 21495153 (-) True G95715
TU141834 lncRNA upstream 31554 22174326 ~ 22244477 (-) True G95934
TU141833 lncRNA upstream 85412 22228184 ~ 22230539 (-) True G95933
TU141841 lncRNA upstream 105284 22248056 ~ 22370625 (-) False G95938
TU141836 lncRNA upstream 153569 22296341 ~ 22297227 (-) False G95936
TU141845 lncRNA upstream 160533 22303305 ~ 22303781 (-) True G95941
XM_043255712.1 mRNA downstream 85702 22041455 ~ 22051686 (-) True pwwp2b
XM_043254889.1 mRNA downstream 112778 21908358 ~ 22024610 (-) True LOC122356328
XM_043254705.1 mRNA downstream 270490 21847430 ~ 21866898 (-) True valopa
XM_043256061.1 mRNA downstream 814385 21269350 ~ 21323003 (-) False LOC122356942
XM_043256219.1 mRNA upstream 9263 22152035 ~ 22156844 (-) False tmem254
XM_043254898.1 mRNA upstream 14893 22157665 ~ 22183174 (-) False srfb
XM_043254899.1 mRNA upstream 14893 22157665 ~ 22183173 (-) True srfb
XM_043254790.1 mRNA upstream 42268 22185040 ~ 22227004 (-) True ptk7b
XM_043255446.1 mRNA upstream 88677 22231449 ~ 22250313 (-) False klc1b
unassigned_transcript_1933 other downstream 483707 21653612 ~ 21653681 (-) True trnag-gcc_72
unassigned_transcript_1932 other downstream 563067 21574251 ~ 21574321 (-) True trnag-gcc_71
unassigned_transcript_1931 other downstream 723517 21413800 ~ 21413871 (-) True trnag-gcc_70
TU141433 other downstream 957171 21007472 ~ 21180217 (-) True G95646
TU141260 other downstream 1565826 20570038 ~ 20571562 (-) True G95526
TU141794 other upstream 8970 22151742 ~ 22156824 (-) False tmem254
TU141795 other upstream 8970 22151742 ~ 22156859 (-) True tmem254
XR_006252351.1 other upstream 90042 22232814 ~ 22250313 (-) False klc1b
TU141832 other upstream 93332 22236104 ~ 22238570 (-) True G95932
TU141837 other upstream 153569 22296341 ~ 22297227 (-) True G95936

Expression Profile