RNA id: TU141841


Basic Information

Item Value
RNA id TU141841
length 4905
lncRNA type read_through
GC content 0.47
exon number 3
gene id G95938
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 22248056 ~ 22370625 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gTTCTTCAGTCCTCATAGCAACTTTATTAacattacatacaaaaatagaaacaaagagcaagaatatataaataaacagttttggaCAGAGAGCGCAAACATAAGGCCGCGAGAGAAACTTTcattcaaacataaaaacagagcATCTGTTGCTGGAATGATCTACAAATCTGACATAAACCccagaaatataataaatatagagcAAAAGCACAGCGAGATCTCTGAGTTGAGGTAGCTTCAGCTCGTCTTCAGCTCGTCTTCAGCTCGTCTTCAGCTCTCTTTAAAGAGTGGGTTACTGAACGCCTGGCAGGAAATAGATTCAGACACGTCCTTCACATTCATCAGCAATATGCCGTACTGGGTTACTAGTATTACTCTTTACTAGTTACTCCTTTCACAAGTAATATCATTACTTTACTAATTACCTTCTAGGAACAGTAATTAGTTACACTACTAGTTACTGCAACCAACTAGtcctaaatgaaataaagtgcacTTCCATAATATACATAGTATAGTGCTGTATTTCCGTGTAttcattttgtacttaatatacaaatatttagtattaatgTAAGTGTTCTCAACTGTGCTGTTTTGAGacaacatgaacatgaacatgaactaaaatgcactttttatgtgttttatgtatttagacACTTGTACTAGTGTAAGAAAGATGGTTCAAGTGTACTACAAGTGCTGACTAAATACATAGTAAACACAAAGAGTGtgttaaaagtgctttttagttcatattcatggtgtcccGAAATAGCACACTTACATGAACTTGCATTTTTCTTAAGAATCACTGGATGAAAATACAGCACTTTGAGCACATGATGTAAGAGCACTGCTTCCCGCCGGACACTAGCGTGAGTCTGGAGTCATAGCGAGGGAGCGGCGTACATACAGGGATACGGCTCCATCGGGCCCCGGCCCCGGCCCCAGCCGCAGTCTGAGAGGATGCAGTCGATGAGAGCCTCGTCCAGCGGCGGCTCCGGCCAGCAGAGGGCCCCGGGGTCCAGGGCCGGTCGTGTCCTGCTGTAGGCGTCGAGGCTGCTGGCCAGAGACCGGATCTGTCGGGCCAGCGTCCCAATCTCTGCCCGCTCCTCCTCGCTGTACAGCAAGGGTCCCTCCGCAGGGGGCGAGGGCTCCGGGGTCAGAAACACAGCGAAGTCCTCCAGAGCCTCGCAGACGCCGTACACGGGGACCAGGTGAGCCTCGGCCGGGCAGAGCTCCGGGGAGAAGGGGTCAGAGGACCGGTCAGGGAGCGGCGGAGGAGGACAGAGCGCTCCGAAGCCCTCGCACAGGAAGTCAGAGGAGCATTGGGAGGAAGTGGGGCTGTAGGGCGGGCTGGAGAAGAAGAGCGGCGGCGGGTCAGCGGCGGGCCCCGAGTCCATCCGGAGTGGGTCACTGTCTTTCTGGACACGAGCCGGCTGAGACGAGCGGTCAGCGCCGTACAGTTTCTCTCTGAGATACACCGCCTCCGCTTCGCTGGAGAACATCAGCAGGGTTAGACTCAACAACCAATCACAAGTCCTCAATCAGATGCTAATTTCAGCTCCACCTATCAGTGAGCAGcatcttttgtttttagctgGCTGTTAAAAATGTAGAGATTCCCTCAAAAACAGCAGTTCATCCAGCAAAACATCTTgagtgaatcactgaatcattcctTCATAAAGTTACATgagattaatattataatattctttcttcagaataaacaaaaacaatttgtgaccctggagcaaaAAACTAGTCATAAGAGATTGATGTCTGGCTTGTTCTGATCGAAAGATATCTGTACAACTATAGatacaactattagaaaatctggaatatgggagaaaaaaatatatagatattgagaaaatcacctttaaaggtTCTTAGCAATGAATACTACTAATCAAAACCGTCTGGATACAGGAAATTGTCAAAACCTCCTCATGGAACATTGCTTAATATCCCAGtgatttttggtaaaaaaagaaaaccgaTCATTTAGACTCATCCAGTGTATCCAGATATACCTGCTGAAGTTTCTGTGCTCCAGGGATATCTTTATCCAGCATGGAGCTGAGATCAGACGCTCACCTGATGACGTGGTTTGTGCAGACGATGGTGTCTCTGGACGGGTCTGAGGAGGCGCAGACGTAGAGACGGATCCAGGACCGGTTCCTCCGCTGCAGACGGACCAGCATCTCTGCGCTCGCTTCACCGCCGTCtgagaaaacacacatacagtcatCTACTGCTCAGGCGTCTGGGGTCTGTAGCACTCTCAGTGTTTGTGAAAGTCATTTAATTGATCGAGAATGTggttgaaaatgtgaaatattattagagttTAAAGAAGCAGTTTTTTATGTGTATCTGATTActccagtgtcacgtgatccttcagaaatctttctaatatactgatttactgatcaagaaagatttctgattattatcaatgttgatgaacagtatttatttcagataatcTGTGCGTTTcagtgtctctggagcacagatatatttgtagAACTAGACAATAATACACTGTATTAACAATACAAAAAGTATTAGGattttaattaaagatcatgttccatgaagatattttgtagatatttcctactgtaaacgtgtcaaaaattcatttttgattagtaatattcattgctaagtgctttaaaggtgatttccTCAATATTTAACGCATCCTTAATGAATAAAAGGGTTTTCTGAGATGTGACTCACTGAGGATGCGATGGCAGTCAGCGGCGGGCGCCAGATCCTCTGGATGCAGGAGCTCGTACCACGATCGACCGATCAGCTCCTCTGCTGAGAAACCCAGGTGGAACGAGACGCTGTGGAAATACCCCTCGCCATCAATAACCGTATCTCAACAATCTCCCAGACCAGGACTCTCTAGAGAAGCGGGTCAGTGGTGTACCTGCGGGGGGCGTGCGTGAGCCTCATGTCCGGTCTGTGGAGCGTCTGGAAGCAGGCGGAGGCCCTCAGGAGCTCGCTGTCCTTCAGTCTGTCGGCCGTGGGCGAGCAGAGGGCCACAAACAGAGCGCCGTCCGCCCGGAGTCGCCCCCTCACCAGCATGGAGCAGCCGGCGGTGTTCTGGAGCCGGAGCGCTCTGGAGCTGTGCATGCGGCACACGAAGCTGCTCTCTGAGAGAAACACGGGATCAGACCTGATCTGAACATCACGCTCAACACTGAAGGAAGCTTCTGAACGCCTCGCTCACCTGCTGAGACGTCCTGCTCTCTCAAGATCTCCTTCACCGCTTCTGCGTCACGAGCGTCCATCATATCATAGAACGAGTCTCCTTGAAGAACGTCCACCTGAAACACCAAACCCTTCTGATCAAGAGCTCTTCCCAAACATCAACACTACACTGATGTTATTAACCTTGATGCAACATCTGAAATCTTTCCGCTGATATATGATTTGTTCATGTATGTGCTCATGTCTTGTACTTTTTCCCAAAGAGTGTaggtaaaaacagaaaacctcTATTGTAGTCTGTCagggaattattattattttaaacaatattttttttttgagacttaaccaaataaattcaaaaaagtCTTCAGTTTTAAGTAAACTTTAGCGTCTGATCAGGTACAATAAAGGATCACAGTTATTTTAACactgctgggttttttttaattattggatTTTTGGTAAAttgcatgaaaacaaaacacgCCTGTGTGTCAAAGCTTTCAACATTCAAGAAGAAATACACCAGCCTTTCAAGCATAGGTGAAACTGATCATAATCATCATTGAATAAGTGCTGACTATAAGAAAGGATAAACGTGAAACAGAAGAACAGACGGGTCTCTCACCATGGACAGCCCGAGGTACTCCTGCACATTTTCAGACACGTAGACCAGCTTTCCGTCTCTGGTCAAAGCCACAATAAATCCAGGCAGCGCTTCCAGAAAGCTCTGGTACAGAGGAGAAGCTCGGTCCTGGAGAAGACCAGAAGGATCCAGACCAGACGGACCCAGACTAGACGGACCCAGACCAGACGGACCCAGACCAGACGGATCCAGACCAGACGGATTCAGACCGCCTCCAGCCCCTGAGAGGAGCACGCTCTTCCGGACGAAGGTGCAGATGAGGGACATGGAGTGCAGGTAGGACAGACGCTCCTGGTCCTCAGCTGAGATGGGCAGCAGTGACCGCAGGGTCCGGATCTCTGCGTTGATGTGGTCTCTCCGGGCTTTAGACGCTCCTTTAGTGGACCTGCATCCGAGCACAGAGAGACGGTCAGACGCTACCAGAACTTCAGGAGAACCCAGACCATAAAACACCGGCTCTAAAAGTCTCATCGATTTCaccactttttttgttaaaggtGATAGTTTAATAGTTTGTGAGAGTTaggatgaatgacactgagccTGTGAGAGGCTTTTATAGACGCTCAAAGTATGAGAAACTTCTTATAAAAGAGAGTCCTGAGTGGAgctccccacacacacacacacacacacacacctatagcTCAGTCTCTGTGTCAGTACAGTAAACAGTAACCTCGCATGTCTAGGACTGATGGTAATCGTAGTGATCGAGTGACTGACCTGACGCGCTTGGACGCGCGGAGAACGCGCCTGACGCTCGCGACGCAGCTCATCCTCGATCTCACAGATCCGACACACTCCAGAGTCCGGGCTTTAAGAGCTCATTTATGCTGAAAACCTCCAGGAACGGGCAAAGAGCACCGGTCAGCCGCTGGGTTGAGTCCGGTTAGTCAgcgctgctgtgtgtgtgagtgtgtgtgtgtgagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtctctgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141834 lncRNA downstream 3579 22174326 ~ 22244477 (-) True G95934
TU141833 lncRNA downstream 17517 22228184 ~ 22230539 (-) True G95933
XR_006252426.1 lncRNA downstream 105284 22137388 ~ 22142772 (-) True LOC122357128
TU141813 lncRNA downstream 111665 22135936 ~ 22136391 (-) True G95922
TU141782 lncRNA downstream 127614 22114696 ~ 22120442 (-) True G95902
TU141890 lncRNA upstream 52494 22423119 ~ 22424220 (-) True G95971
TU141839 lncRNA upstream 94521 22465146 ~ 22471340 (-) True G95937
TU141910 lncRNA upstream 150391 22521016 ~ 22521948 (-) True G95984
TU141911 lncRNA upstream 151330 22521955 ~ 22523449 (-) True G95985
TU141916 lncRNA upstream 250417 22621042 ~ 22621428 (-) True G95990
XM_043254790.1 mRNA downstream 21052 22185040 ~ 22227004 (-) True ptk7b
XM_043254898.1 mRNA downstream 64882 22157665 ~ 22183174 (-) False srfb
XM_043254899.1 mRNA downstream 64883 22157665 ~ 22183173 (-) True srfb
XM_043256219.1 mRNA downstream 91212 22152035 ~ 22156844 (-) False tmem254
XM_043255712.1 mRNA downstream 196370 22041455 ~ 22051686 (-) True pwwp2b
XM_043254793.1 mRNA upstream 64623 22435248 ~ 22448011 (-) False LOC122356262
XM_043254794.1 mRNA upstream 114664 22485289 ~ 22489323 (-) True LOC122356263
XM_043254796.1 mRNA upstream 432093 22802718 ~ 22819457 (-) True LOC122356266
XM_043254876.1 mRNA upstream 764193 23134818 ~ 23136642 (-) True c1d
XM_043254869.1 mRNA upstream 786477 23157102 ~ 23167091 (-) False LOC122356317
TU141832 other downstream 9486 22236104 ~ 22238570 (-) True G95932
TU141795 other downstream 91197 22151742 ~ 22156859 (-) True tmem254
TU141794 other downstream 91232 22151742 ~ 22156824 (-) False tmem254
TU141816 other downstream 104086 22138329 ~ 22143970 (-) False LOC122357128
unassigned_transcript_1933 other downstream 594375 21653612 ~ 21653681 (-) True trnag-gcc_72
TU141887 other upstream 942 22371567 ~ 22438998 (-) True LOC122356262
TU141882 other upstream 8467 22379092 ~ 22443286 (-) False LOC122356262
TU141894 other upstream 50311 22420936 ~ 22422869 (-) True G95972
TU141976 other upstream 451356 22821981 ~ 22823259 (-) True G96036
TU141977 other upstream 451356 22821981 ~ 22822514 (-) False G96036

Expression Profile